| from pathlib import Path |
|
|
| from setuptools import setup, find_packages |
|
|
|
|
| readme_path = Path(__file__).with_name("README.md") |
| long_description = readme_path.read_text(encoding="utf-8") if readme_path.exists() else ( |
| "MULTI-evolve: model-guided, universal, targeted installation of multi-mutants" |
| ) |
|
|
| setup( |
| name="multievolve", |
| version="0.1.0", |
| packages=find_packages(), |
| include_package_data=True, |
| scripts=['scripts/p1_train.py', |
| 'scripts/p2_propose.py', |
| 'scripts/p3_assembly_design.py', |
| 'scripts/plm_zeroshot_ensemble.py'], |
| install_requires=[ |
| "torch>=2.1.0", |
| "numpy>=1.26", |
| "pandas>=2.2", |
| "matplotlib>=3.10", |
| "seaborn>=0.13", |
| "scipy>=1.15", |
| "biopython>=1.85", |
| "scikit-learn>=1.6", |
| "scikit-optimize>=0.10", |
| "wandb>=0.19", |
| "Levenshtein", |
| "streamlit>=1.45", |
| "fair-esm", |
| "biotite>=0.41.2", |
| ], |
| python_requires=">=3.11", |
| authors="Vincent Q. Tran, Matthew Nemeth, and Brian Hie", |
| description="MULTI-evolve: model-guided, universal, targeted installation of multi-mutants", |
| long_description=long_description, |
| long_description_content_type="text/markdown", |
| url="https://github.com/VincentQTran/multievolve", |
| classifiers=[ |
| "Programming Language :: Python :: 3", |
| "License :: OSI Approved :: MIT License", |
| "Operating System :: OS Independent", |
| ], |
| ) |
|
|
