Datasets:
ClarusC64
/
ABX-RM-005_target_modification_penetration-v0.1

Dataset card Data Studio Files
xet
Community
row_id
string
series_id
string
timepoint_h
int64
organism
string
strain_id
string
drug_name
string
target_gene
string
mutation_id
string
mutant_frac_target_mod
float64
mic_drug_mg_L
float64
resistant_mic_cutoff_mg_L
float64
media
string
assay_method
string
source_type
string
penetration_signal
int64
earliest_penetration
int64
notes
string
ABXRM005-TR-0001
S1
0
Staphylococcus aureus
SA-CLIN101
rifampicin
rpoB
rpoB_S531L
0
0.03
1
CAMHB
amplicon_seq
simulated
0
0
baseline
ABXRM005-TR-0002
S1
12
Staphylococcus aureus
SA-CLIN101
rifampicin
rpoB
rpoB_S531L
0.05
0.03
1
CAMHB
amplicon_seq
simulated
0
0
early low level
ABXRM005-TR-0003
S1
24
Staphylococcus aureus
SA-CLIN101
rifampicin
rpoB
rpoB_S531L
0.22
0.06
1
CAMHB
amplicon_seq
simulated
1
1
penetration before phenotype
ABXRM005-TR-0004
S1
48
Staphylococcus aureus
SA-CLIN101
rifampicin
rpoB
rpoB_S531L
0.55
4
1
CAMHB
amplicon_seq
simulated
1
0
phenotype emerges
ABXRM005-TR-0005
S2
0
Escherichia coli
EC-CLIN220
ciprofloxacin
gyrA
gyrA_S83L
0
0.25
1
CAMHB
amplicon_seq
simulated
0
0
baseline
ABXRM005-TR-0006
S2
24
Escherichia coli
EC-CLIN220
ciprofloxacin
gyrA
gyrA_S83L
0.04
0.25
1
CAMHB
amplicon_seq
simulated
0
0
stable
ABXRM005-TR-0007
S2
48
Escherichia coli
EC-CLIN220
ciprofloxacin
gyrA
gyrA_S83L
0.06
0.25
1
CAMHB
amplicon_seq
simulated
0
0
no penetration
ABXRM005-TR-0008
S3
0
Streptococcus pneumoniae
SP-CLIN330
penicillin
pbp2x
pbp2x_T338A
0
0.06
2
CAMHB
amplicon_seq
simulated
0
0
baseline
ABXRM005-TR-0009
S3
12
Streptococcus pneumoniae
SP-CLIN330
penicillin
pbp2x
pbp2x_T338A
0.85
0.06
2
CAMHB
amplicon_seq
simulated
0
0
spike candidate
ABXRM005-TR-0010
S3
24
Streptococcus pneumoniae
SP-CLIN330
penicillin
pbp2x
pbp2x_T338A
0.02
0.06
2
CAMHB
amplicon_seq
simulated
0
0
snapback artifact