Create data/test.csv

data/test.csv

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+row_id,series_id,timepoint_h,organism,strain_id,drug_name,drug_class,stress_index,gyrA_mut_frac,parC_mut_frac,mutation_burden,mic_drug_mg_L,resistant_mic_cutoff_mg_L,sequencing_depth,assay_method,source_type,mutation_cascade_signal,earliest_mutation_cascade,notes
+ABXRM014-TE-0001,S5,0,Escherichia coli,EC-CLIN901,ciprofloxacin,fluoroquinolone,0.10,0.00,0.00,0.00,0.25,4.00,2500,deep_amplicon,simulated,0,0,baseline
+ABXRM014-TE-0002,S5,6,Escherichia coli,EC-CLIN901,ciprofloxacin,fluoroquinolone,0.85,0.14,0.00,0.14,0.25,4.00,2500,deep_amplicon,simulated,0,0,gyrA begins
+ABXRM014-TE-0003,S5,12,Escherichia coli,EC-CLIN901,ciprofloxacin,fluoroquinolone,0.90,0.30,0.03,0.33,0.50,4.00,2500,deep_amplicon,simulated,1,1,parC follows
+ABXRM014-TE-0004,S5,24,Escherichia coli,EC-CLIN901,ciprofloxacin,fluoroquinolone,0.90,0.45,0.12,0.57,1.00,4.00,2500,deep_amplicon,simulated,1,0,cascade continues MIC low
+ABXRM014-TE-0005,S5,48,Escherichia coli,EC-CLIN901,ciprofloxacin,fluoroquinolone,0.90,0.70,0.38,1.08,16.0,4.00,2500,deep_amplicon,simulated,1,0,MIC crosses later
+ABXRM014-TE-0006,S6,0,Klebsiella pneumoniae,KP-CLIN777,levofloxacin,fluoroquinolone,0.10,0.00,0.00,0.00,16.0,8.00,2000,deep_amplicon,simulated,0,0,baseline MIC already resistant
+ABXRM014-TE-0007,S7,0,Escherichia coli,EC-CLIN600,ciprofloxacin,fluoroquinolone,0.10,0.00,0.00,0.00,0.25,4.00,2000,deep_amplicon,simulated,0,0,baseline
+ABXRM014-TE-0008,S7,12,Escherichia coli,EC-CLIN600,ciprofloxacin,fluoroquinolone,0.90,0.05,0.30,0.35,0.25,4.00,2000,deep_amplicon,simulated,0,0,parC leads invalid
+ABXRM014-TE-0009,S8,0,Escherichia coli,EC-CLIN333,ciprofloxacin,fluoroquinolone,0.10,0.00,0.00,0.00,0.25,4.00,2000,deep_amplicon,simulated,0,0,baseline
+ABXRM014-TE-0010,S8,6,Escherichia coli,EC-CLIN333,ciprofloxacin,fluoroquinolone,0.90,0.60,0.00,0.60,0.25,4.00,2000,deep_amplicon,simulated,0,0,one point only keep v1 strict