Datasets:
Update dataset card: add schema, stats, citation, and Converge Bio about section
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README.md
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# UniRef90
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Complete [UniRef90](https://www.uniprot.org/uniref?query=identity:0.9) dataset from UniProt, converted to sharded Parquet. UniRef90 clusters
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**Part of the [ConvergeBio Protein Database Collection](https://huggingface.co/collections/ConvergeBio/protein-database)**
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## Dataset Summary
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| **Clusters** | 188,848,220 |
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| **Shards** | 386 |
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| **Compressed size** | ~52 GB (zstd) |
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| **Sequence lengths** | 11
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| **Members per cluster** | 1
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| **GO annotation coverage** | MF 23.6%
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| **Updated range** | 2006-10-31 to 2026-01-28 |
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## Schema
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## Data Processing
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- **Source:** `uniref90.xml.gz` from the [UniProt FTP](https://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/)
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- **Parsing:** Streaming XML parse with `lxml.etree.iterparse`, multi-process
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- **Integrity:** xxHash-128 computed per sequence; CRC64 preserved from source XML
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- **Validation:** Passed all tiers
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- **Format:** Sharded Parquet with zstd compression
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## Source & Citation
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> Suzek BE, Wang Y, Huang H, McGarvey PB, Wu CH, UniProt Consortium.
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> "UniRef clusters: a comprehensive and scalable alternative for improving
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> sequence similarity searches." *Bioinformatics* 31(6):926
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> [doi:10.1093/bioinformatics/btu739](https://doi.org/10.1093/bioinformatics/btu739)
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## License
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UniProt data is available under [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/).
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# UniRef90
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Complete [UniRef90](https://www.uniprot.org/uniref?query=identity:0.9) dataset from UniProt, converted from XML to sharded Parquet. UniRef90 clusters sequences at 90% identity, providing a non-redundant protein sequence resource that balances comprehensiveness with reduced redundancy.
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**Part of the [ConvergeBio Protein Database Collection](https://huggingface.co/collections/ConvergeBio/protein-database)** — see also [UniRef100](https://huggingface.co/datasets/ConvergeBio/uniref100), [UniRef50](https://huggingface.co/datasets/ConvergeBio/uniref50), and [UniClust30](https://huggingface.co/datasets/ConvergeBio/uniclust30).
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## Dataset Summary
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| **Clusters** | 188,848,220 |
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| **Shards** | 386 |
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| **Compressed size** | ~52 GB (zstd) |
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| **Sequence lengths** | 11 – 49,499 aa (median 266, mean 351) |
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| **Members per cluster** | 1 – 62,973 (median 1, mean 2.8) |
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| **GO annotation coverage** | MF 23.6% · BP 15.4% · CC 15.5% |
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| **Updated range** | 2006-10-31 to 2026-01-28 |
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## Schema
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## Data Processing
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- **Source:** `uniref90.xml.gz` from the [UniProt FTP](https://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/)
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- **Parsing:** Streaming XML parse with `lxml.etree.iterparse`, multi-process for throughput
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- **Integrity:** xxHash-128 computed per sequence; CRC64 preserved from source XML
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- **Validation:** Passed all tiers — schema conformance, zero null/empty sequences, xxHash roundtrip, CRC64 format, GO term format, member ID consistency, and field-by-field comparison against source XML
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- **Format:** Sharded Parquet with zstd compression
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## Source & Citation
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> Suzek BE, Wang Y, Huang H, McGarvey PB, Wu CH, UniProt Consortium.
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> "UniRef clusters: a comprehensive and scalable alternative for improving
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> sequence similarity searches." *Bioinformatics* 31(6):926–932 (2015).
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> [doi:10.1093/bioinformatics/btu739](https://doi.org/10.1093/bioinformatics/btu739)
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## About
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Built by [Converge Bio](https://converge-bio.com) — accelerating drug discovery with generative AI. Converge Bio develops foundation models for protein engineering, antibody design, and gene expression optimization, powering its computational lab products ConvergeAB, ConvergeGEO, and ConvergeCELL.
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## License
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UniProt data is available under [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/).
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