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README.md
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- name: distance_matrix
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sequence:
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sequence: float64
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splits:
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- name: train
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num_bytes: 409754325
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num_examples: 2992
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download_size: 401898607
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dataset_size: 409754325
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configs:
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- config_name: default
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data_files:
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- split: train
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path: data/train-*
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---
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---
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license: mit
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task_categories:
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- text-generation
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- image-generation
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tags:
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- protein
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- contact-map
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- structure
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- nanobody
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---
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# Protein Contact Map Dataset
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## Dataset Description
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This dataset contains protein structures with contact maps and related information from nanobody sequences.
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### Dataset Summary
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- **Number of proteins:** 2992
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- **Source:** Nanobody protein structures (nanos_networkx_small)
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- **Created by:** alexchilton
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- **Date:** 2025-05-04
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### Dataset Structure
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Each protein entry contains:
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- `amino_acid_sequence`: List of amino acid names
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- `length`: Number of residues
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- `c_alpha_coordinates`: List of [x,y,z] coordinates for C-alpha atoms
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- `distance_matrix`: Pairwise distance matrix between C-alpha atoms
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- `contact_maps`: List of binary contact maps with different distance thresholds
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- `contact_map_configs`: Configuration for each contact map (lower/upper bounds)
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### Usage
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```python
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from datasets import load_dataset
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dataset = load_dataset("alexchilton/nanobody-contact-maps")
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# Access a protein
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protein = dataset['train'][0]
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print(f"Length: {protein['length']}")
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print(f"First 10 residues: {protein['amino_acid_sequence'][:10]}")
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```
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### Citation
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If you use this dataset, please cite:
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```
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@dataset{protein_contact_maps,
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title={Nanobody Protein Contact Map Dataset},
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author={Alex Chilton},
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year={2025},
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url={https://huggingface.co/datasets/alexchilton/nanobody-contact-maps}
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}
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```
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