feat: add loader
Browse files- requirements.txt +2 -0
- schemas/README.md +122 -0
- schemas/__init__.py +6 -0
- schemas/base.py +83 -0
- schemas/person.py +31 -0
- scripts/load_persons_to_db.py +179 -0
requirements.txt
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tomlkit==0.13.3
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duckdb==1.4.1
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schemas/README.md
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# Schemas
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This directory contains schema definitions for various entity types in the raw Philippine data project.
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## Structure
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- `base.py` - Base classes and utilities for all schemas
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- `person.py` - Schema definition for persons
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- Add more entity schemas as needed
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## How to Define a New Schema
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### 1. Create a new schema file
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Create `schemas/your_entity.py`:
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```python
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from schemas.base import SchemaDefinition
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YOUR_ENTITY_SCHEMA = SchemaDefinition(
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table_name='your_entities',
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schema={
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'id': 'VARCHAR PRIMARY KEY',
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'name': 'VARCHAR',
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'nested_field': 'JSON',
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},
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field_order=['id', 'name', 'nested_field'],
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nested_fields=set(['nested_field'])
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)
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```
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### 2. Create a loader script
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Create `scripts/load_your_entity_to_db.py`:
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```python
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import sys
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import argparse
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from pathlib import Path
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sys.path.insert(0, str(Path(__file__).parent.parent))
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from schemas.your_entity import YOUR_ENTITY_SCHEMA
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from schemas.base import transform_value
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from config import DATABASE_PATH
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# Then use YOUR_ENTITY_SCHEMA.get_create_table_sql(), etc.
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# Add argparse with --db-path argument for flexibility
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# Default database: databases/data.duckdb (shared across all entities)
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```
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### 3. Update the schema as needed
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When adding new fields:
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1. Add to `schema` dict with SQL type
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2. Add to `field_order` list
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3. If nested (dict/array), add to `nested_fields` set
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## Schema Definition Reference
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### `SchemaDefinition` class
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**Attributes:**
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- `table_name` (str): Name of the database table
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- `schema` (dict): Field names → SQL types
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- `field_order` (list): Ordered list of fields for INSERT
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- `nested_fields` (set): Fields containing JSON/nested data
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**Methods:**
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- `get_create_table_sql()`: Returns CREATE TABLE statement
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- `get_insert_sql()`: Returns INSERT statement with placeholders
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### `transform_value()` function
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Transforms TOML values for database storage:
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- Converts dicts/lists to JSON for nested fields
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- Passes through primitive types unchanged
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- Handles None values
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**Usage:**
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```python
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from schemas.base import transform_value
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value = transform_value(
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field_name='positions',
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value={'title': 'Mayor'},
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nested_fields={'positions'}
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)
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# Returns: '{"title": "Mayor"}'
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```
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## Adding Nested Fields
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For nested data (objects, arrays):
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1. Add field to schema with `JSON` type:
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```python
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schema={'positions': 'JSON'}
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```
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2. Add to nested_fields set:
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```python
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nested_fields=set(['positions'])
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```
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3. Use transform_value when inserting:
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```python
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values = [
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transform_value(field, data.get(field), SCHEMA.nested_fields)
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for field in SCHEMA.field_order
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]
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```
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## Database Configuration
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All loader scripts use the shared `config.py` file which defines:
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- **DATABASE_PATH**: Default path to `databases/data.duckdb` (shared by all entities)
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- All entities (persons, groups, etc.) are stored in the same database as separate tables
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- Use `--db-path` CLI argument to override the default database path
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## Examples
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- **Person schema**: `person.py` - Basic schema with flat fields
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schemas/__init__.py
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"""
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Schema definitions for raw Philippine data.
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This package contains schema definitions for various entity types
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(persons, groups, etc.) that define how data is structured in the database.
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"""
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schemas/base.py
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"""
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Base utilities for schema definitions.
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Provides common functionality for transforming and validating data
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across different entity types.
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"""
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import json
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from typing import Any, Dict, Set
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from dataclasses import dataclass
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@dataclass
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class SchemaDefinition:
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"""
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Base schema definition for an entity type.
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Attributes:
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table_name: Name of the database table
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schema: Dict mapping field names to SQL types
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field_order: List of fields in order for INSERT statements
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nested_fields: Set of field names that contain nested/complex data
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"""
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table_name: str
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schema: Dict[str, str]
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field_order: list[str]
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nested_fields: Set[str]
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def get_create_table_sql(self) -> str:
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"""Generate CREATE TABLE SQL statement."""
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columns = [f"{field} {field_type}" for field, field_type in self.schema.items()]
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return f"""
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CREATE TABLE IF NOT EXISTS {self.table_name} (
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{', '.join(columns)}
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)
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"""
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def get_insert_sql(self) -> str:
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"""Generate INSERT SQL statement."""
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placeholders = ', '.join(['?' for _ in self.field_order])
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return f"""
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INSERT INTO {self.table_name} ({', '.join(self.field_order)})
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VALUES ({placeholders})
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ON CONFLICT (id) DO NOTHING
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"""
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def transform_value(field_name: str, value: Any, nested_fields: Set[str]) -> Any:
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"""
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Transform a field value for database storage.
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Handles nested objects, arrays, and type conversions.
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Args:
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field_name: Name of the field being transformed
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value: The value to transform
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nested_fields: Set of field names that should be stored as JSON
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Returns:
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Transformed value ready for database insertion
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"""
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if value is None:
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return None
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# Check if this field should be stored as JSON
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if field_name in nested_fields:
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if isinstance(value, (dict, list)):
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return json.dumps(value)
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elif isinstance(value, str):
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# Already a string, assume it's valid JSON or plain text
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return value
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else:
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# Convert other types to JSON
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return json.dumps(value)
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# Handle non-nested complex types that shouldn't be in the data
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if isinstance(value, (dict, list)):
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# Warn: this field has nested data but isn't marked as nested_fields
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# Store as JSON anyway to avoid data loss
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return json.dumps(value)
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# Return primitive types as-is
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return value
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schemas/person.py
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"""
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Schema definition for persons.
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Update this file when adding new fields to the person data model.
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"""
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from schemas.base import SchemaDefinition
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# Define the person schema
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PERSON_SCHEMA = SchemaDefinition(
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table_name='persons',
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schema={
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'id': 'VARCHAR PRIMARY KEY',
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'first_name': 'VARCHAR',
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'last_name': 'VARCHAR',
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# Add new fields here as needed:
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# 'middle_name': 'VARCHAR',
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# 'birth_date': 'DATE',
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# 'positions': 'JSON', # For nested arrays of positions
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# 'addresses': 'JSON', # For nested address objects
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# etc.
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},
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field_order=['id', 'first_name', 'last_name'],
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nested_fields=set([
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# Add nested field names here:
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# 'positions',
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# 'addresses',
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# 'metadata',
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])
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)
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scripts/load_persons_to_db.py
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|
| 1 |
+
#!/usr/bin/env python3
|
| 2 |
+
"""
|
| 3 |
+
Load person data from TOML files into a DuckDB database.
|
| 4 |
+
|
| 5 |
+
This script scans the data/person directory for TOML files and loads them
|
| 6 |
+
into a local DuckDB database for duplicate detection and processing.
|
| 7 |
+
"""
|
| 8 |
+
|
| 9 |
+
import sys
|
| 10 |
+
import argparse
|
| 11 |
+
from pathlib import Path
|
| 12 |
+
import tomlkit
|
| 13 |
+
import duckdb
|
| 14 |
+
|
| 15 |
+
# Add parent directory to path to import schemas and config
|
| 16 |
+
sys.path.insert(0, str(Path(__file__).parent.parent))
|
| 17 |
+
|
| 18 |
+
from schemas.person import PERSON_SCHEMA
|
| 19 |
+
from schemas.base import transform_value
|
| 20 |
+
from config import DATABASE_PATH, PERSON_DATA_DIR
|
| 21 |
+
|
| 22 |
+
|
| 23 |
+
def load_toml_file(file_path: Path) -> dict:
|
| 24 |
+
"""Load and parse a TOML file."""
|
| 25 |
+
with open(file_path, 'r', encoding='utf-8') as f:
|
| 26 |
+
return tomlkit.load(f)
|
| 27 |
+
|
| 28 |
+
|
| 29 |
+
def get_person_toml_files(data_dir: Path):
|
| 30 |
+
"""Recursively find all TOML files in the person data directory (generator)."""
|
| 31 |
+
return data_dir.glob('**/*.toml')
|
| 32 |
+
|
| 33 |
+
|
| 34 |
+
def create_persons_table(conn: duckdb.DuckDBPyConnection):
|
| 35 |
+
"""Create the persons table using the explicit schema."""
|
| 36 |
+
create_sql = PERSON_SCHEMA.get_create_table_sql()
|
| 37 |
+
|
| 38 |
+
print(f"Creating table '{PERSON_SCHEMA.table_name}' with {len(PERSON_SCHEMA.schema)} columns:")
|
| 39 |
+
print(f" Fields: {', '.join(PERSON_SCHEMA.field_order)}")
|
| 40 |
+
|
| 41 |
+
conn.execute(create_sql)
|
| 42 |
+
|
| 43 |
+
|
| 44 |
+
def load_persons_to_db(data_dir: Path, db_path: Path):
|
| 45 |
+
"""Load all person TOML files into the DuckDB database."""
|
| 46 |
+
print(f"Connecting to database: {db_path}")
|
| 47 |
+
conn = duckdb.connect(str(db_path))
|
| 48 |
+
|
| 49 |
+
# Create table with explicit schema
|
| 50 |
+
create_persons_table(conn)
|
| 51 |
+
|
| 52 |
+
# Build INSERT statement using schema definition
|
| 53 |
+
insert_sql = PERSON_SCHEMA.get_insert_sql()
|
| 54 |
+
|
| 55 |
+
# Load data within a single transaction for performance
|
| 56 |
+
print("\nLoading person data...")
|
| 57 |
+
loaded_count = 0
|
| 58 |
+
error_count = 0
|
| 59 |
+
processed_count = 0
|
| 60 |
+
unknown_fields_seen = set()
|
| 61 |
+
|
| 62 |
+
# Start explicit transaction
|
| 63 |
+
conn.execute("BEGIN TRANSACTION")
|
| 64 |
+
|
| 65 |
+
try:
|
| 66 |
+
for toml_file in get_person_toml_files(data_dir):
|
| 67 |
+
try:
|
| 68 |
+
person_data = load_toml_file(toml_file)
|
| 69 |
+
|
| 70 |
+
# Warn about unknown fields (helps catch typos)
|
| 71 |
+
for field in person_data.keys():
|
| 72 |
+
if field not in PERSON_SCHEMA.schema and field not in unknown_fields_seen:
|
| 73 |
+
print(f" Warning: Unknown field '{field}' found in {toml_file.name} (will be ignored)")
|
| 74 |
+
unknown_fields_seen.add(field)
|
| 75 |
+
|
| 76 |
+
# Build values list in the same order as field_order
|
| 77 |
+
# Apply transformation for nested/complex types
|
| 78 |
+
values = [
|
| 79 |
+
transform_value(field, person_data.get(field), PERSON_SCHEMA.nested_fields)
|
| 80 |
+
for field in PERSON_SCHEMA.field_order
|
| 81 |
+
]
|
| 82 |
+
|
| 83 |
+
# Insert person data
|
| 84 |
+
conn.execute(insert_sql, values)
|
| 85 |
+
|
| 86 |
+
loaded_count += 1
|
| 87 |
+
processed_count += 1
|
| 88 |
+
|
| 89 |
+
# Progress indicator
|
| 90 |
+
if processed_count % 100 == 0:
|
| 91 |
+
print(f" Processed {processed_count} files...")
|
| 92 |
+
|
| 93 |
+
except Exception as e:
|
| 94 |
+
error_count += 1
|
| 95 |
+
processed_count += 1
|
| 96 |
+
print(f" Error loading {toml_file}: {e}")
|
| 97 |
+
|
| 98 |
+
# Commit transaction
|
| 99 |
+
conn.execute("COMMIT")
|
| 100 |
+
print(" Transaction committed")
|
| 101 |
+
|
| 102 |
+
except Exception as e:
|
| 103 |
+
# Rollback on error
|
| 104 |
+
conn.execute("ROLLBACK")
|
| 105 |
+
print(f" Transaction rolled back due to error: {e}")
|
| 106 |
+
raise
|
| 107 |
+
|
| 108 |
+
# Show summary
|
| 109 |
+
print(f"\n{'='*60}")
|
| 110 |
+
print(f"Load complete!")
|
| 111 |
+
print(f" Total files processed: {processed_count}")
|
| 112 |
+
print(f" Successfully loaded: {loaded_count}")
|
| 113 |
+
print(f" Errors: {error_count}")
|
| 114 |
+
|
| 115 |
+
# Show database stats
|
| 116 |
+
result = conn.execute("SELECT COUNT(*) as total FROM persons").fetchone()
|
| 117 |
+
print(f" Total persons in database: {result[0]}")
|
| 118 |
+
print(f"{'='*60}")
|
| 119 |
+
|
| 120 |
+
# Show sample data
|
| 121 |
+
print("\nSample data (first 5 rows):")
|
| 122 |
+
sample = conn.execute("""
|
| 123 |
+
SELECT id, first_name, last_name
|
| 124 |
+
FROM persons
|
| 125 |
+
LIMIT 5
|
| 126 |
+
""").fetchall()
|
| 127 |
+
|
| 128 |
+
for row in sample:
|
| 129 |
+
print(f" {row[0]}: {row[1]} {row[2]}")
|
| 130 |
+
|
| 131 |
+
conn.close()
|
| 132 |
+
print(f"\nDatabase saved to: {db_path}")
|
| 133 |
+
|
| 134 |
+
|
| 135 |
+
def main():
|
| 136 |
+
"""Main entry point."""
|
| 137 |
+
parser = argparse.ArgumentParser(
|
| 138 |
+
description='Load person data from TOML files into a DuckDB database',
|
| 139 |
+
formatter_class=argparse.RawDescriptionHelpFormatter,
|
| 140 |
+
epilog="""
|
| 141 |
+
Examples:
|
| 142 |
+
# Use default database path (databases/data.duckdb)
|
| 143 |
+
python scripts/load_persons_to_db.py
|
| 144 |
+
|
| 145 |
+
# Specify custom database path
|
| 146 |
+
python scripts/load_persons_to_db.py --db-path /path/to/custom.duckdb
|
| 147 |
+
|
| 148 |
+
# Use a different data directory
|
| 149 |
+
python scripts/load_persons_to_db.py --data-dir /path/to/person/data
|
| 150 |
+
"""
|
| 151 |
+
)
|
| 152 |
+
parser.add_argument(
|
| 153 |
+
'--db-path',
|
| 154 |
+
type=Path,
|
| 155 |
+
default=DATABASE_PATH,
|
| 156 |
+
help=f'Path to the DuckDB database (default: {DATABASE_PATH})'
|
| 157 |
+
)
|
| 158 |
+
parser.add_argument(
|
| 159 |
+
'--data-dir',
|
| 160 |
+
type=Path,
|
| 161 |
+
default=PERSON_DATA_DIR,
|
| 162 |
+
help=f'Path to the person data directory (default: {PERSON_DATA_DIR})'
|
| 163 |
+
)
|
| 164 |
+
|
| 165 |
+
args = parser.parse_args()
|
| 166 |
+
|
| 167 |
+
# Validate data directory exists
|
| 168 |
+
if not args.data_dir.exists():
|
| 169 |
+
print(f"Error: Data directory not found: {args.data_dir}")
|
| 170 |
+
sys.exit(1)
|
| 171 |
+
|
| 172 |
+
# Create databases directory if it doesn't exist
|
| 173 |
+
args.db_path.parent.mkdir(parents=True, exist_ok=True)
|
| 174 |
+
|
| 175 |
+
load_persons_to_db(args.data_dir, args.db_path)
|
| 176 |
+
|
| 177 |
+
|
| 178 |
+
if __name__ == '__main__':
|
| 179 |
+
main()
|