Chris Oswald
commited on
Commit
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3013e2b
1
Parent(s):
6bb95ec
debugging
Browse files
SPIDER.py
CHANGED
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@@ -487,15 +487,15 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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# Convert .mha image to original size numeric array
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image_array_original = sitk.GetArrayFromImage(image)
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# Rescale to UInt8 type (required for PyArrow and PIL)
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image_array_rescaled = skimage.img_as_ubyte(image_array_original)
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# Convert .mha image to standardized numeric array
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image_array_standardized = standardize_3D_image(
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-
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resize_shape,
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)
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# Load .mha mask file
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mask_path = os.path.join(paths_dict['masks'], 'masks', example)
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mask = sitk.ReadImage(mask_path)
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# Convert .mha image to original size numeric array
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image_array_original = sitk.GetArrayFromImage(image)
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# Convert .mha image to standardized numeric array
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image_array_standardized = standardize_3D_image(
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image_array_original,
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resize_shape,
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)
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+
# Rescale to UInt8 type (required for PyArrow and PIL)
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+
image_array_standardized = skimage.img_as_ubyte(image_array_standardized)
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+
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# Load .mha mask file
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mask_path = os.path.join(paths_dict['masks'], 'masks', example)
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mask = sitk.ReadImage(mask_path)
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