Datasets:
Tasks:
Tabular Regression
Modalities:
Text
Formats:
csv
Languages:
English
Size:
10K - 100K
DOI:
License:
Update README.md
Browse files
README.md
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@@ -135,13 +135,15 @@ aging clocks:
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`pip install computage`
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Now, suppose you have trained your brand-new epigenetic aging clock model using the classic `scikit-learn` library. You saved your model as `pickle` file.
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Then, the following block of code can be used to benchmark your model.
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```python
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from computage import run_benchmark
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# first, define a method to impute NaNs for the in_library models
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# we recommend using imputation with gold standard values from
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imputation = 'sesame_450k'
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# for example, take these three clock models for benchmarking
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### Explore the dataset
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In case you want
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```python
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from huggingface_hub import snapshot_download
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repo_type="dataset",
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local_dir='.')
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```
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Once downloaded, the dataset can be open with `pandas` (or any other `parquet` reader).
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```python
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import pandas as pd
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`pip install computage`
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Now, suppose you have trained your brand-new epigenetic aging clock model using the classic `scikit-learn` library. You saved your model as `pickle` file.
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Then, the following block of code can be used to benchmark your model.
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We also implemented imputation of missing values from the [SeSAMe package](https://github.com/zwdzwd/sesame)
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and added several published aging clock models for comparison.
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```python
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from computage import run_benchmark
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# first, define a method to impute NaNs for the in_library models
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# we recommend using imputation with gold standard values from SeSAMe
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imputation = 'sesame_450k'
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# for example, take these three clock models for benchmarking
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### Explore the dataset
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In case you only want to explore our dataset locally, use the following commands to download it:
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```python
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from huggingface_hub import snapshot_download
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repo_type="dataset",
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local_dir='.')
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```
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Once downloaded, the dataset can be open with `pandas` (or any other `parquet` reader).
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```python
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import pandas as pd
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