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README.md
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@@ -26,15 +26,15 @@ A multimodal dataset of **979 chest X-ray examinations**, each with:
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1. **Chest X-ray image** (full-resolution PNG, anonymised)
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2. **Consensus image-level labels** (37 radiological findings, agreed by two expert radiologists with adjudication)
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3. **Bounding box annotations** on the image (localising each finding)
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4. **Original radiology report text**
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5. **Report span annotations** (token-level labels across 45 categories)
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This dataset combines resources from two annotation processes described in the papers below. The image-level labels
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**Website:** [x-raydar.info](https://x-raydar.info)
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**X-ray classifier:** [dnamodel/xraydar-cv](https://huggingface.co/dnamodel/xraydar-cv)
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**Report classifier:** [dnamodel/xraydar-nlp](https://huggingface.co/dnamodel/xraydar-nlp)
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**Full annotated reports (29,756):** [dnamodel/xraydar-reports](https://huggingface.co/datasets/dnamodel/xraydar-reports)
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## Dataset Structure
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"image_file": "images/1858.png",
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"consensus_labels": ["consolidation", "mediastinum_widened", "unfolded_aorta", "volume_loss"],
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"bounding_boxes": [
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{"label": "consolidation", "x_min": 1200, "y_min": 800, "x_max": 1500, "y_max": 1100},
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{"label": "mediastinum_widened", "x_min": 700, "y_min": 200, "x_max": 1000, "y_max": 600}
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],
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"report_text": "There is consolidation in the left lower zone...",
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"report_tokens": ["There", "is", "consolidation", "in", "the", "..."],
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| Field | Source | Description |
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|-------|--------|-------------|
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| `consensus_labels` | Two radiologists + adjudication | Agreed image-level findings (37 classes) |
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| `bounding_boxes` |
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| `report_text` | Historical clinical report | Original free-text report written at time of exam |
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| `report_spans` | Separate annotation team | Token-level finding labels extracted from the report text (45 classes) |
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| `report_labels` | Derived from `report_spans` | Report-level labels (findings mentioned in text) |
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## Data Provenance
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- **Images**: Frontal chest X-rays from three UK NHS hospital networks (2006–2019), extracted from DICOM as anonymised PNGs at native resolution.
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- **Image annotations**: Produced using the AnnotateX platform. Two experienced radiologists independently annotated each image with finding labels and bounding boxes.
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- **Report text**: Historical free-text radiology reports associated with each examination.
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- **Report annotations**: 29,756 reports were manually annotated by ten radiologists using the AnnotateX platform, with span-level labels across 45 categories.
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1. **Chest X-ray image** (full-resolution PNG, anonymised)
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2. **Consensus image-level labels** (37 radiological findings, agreed by two expert radiologists with adjudication)
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3. **Bounding box annotations** on the image from each annotator independently (localising each finding)
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4. **Original radiology report text**
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5. **Report span annotations** (token-level labels across 45 categories)
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This dataset combines resources from two annotation processes described in the papers below. The image-level consensus labels were agreed by two experienced radiologists with a third senior radiologist adjudicating disagreements. Individual bounding boxes from each annotator are provided separately (identified by the `annotator` field), allowing researchers to study inter-annotator agreement or merge boxes as needed. The report text annotations were produced independently by a separate team of radiologists.
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**Website:** [x-raydar.info](https://x-raydar.info)
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**X-ray classifier:** [dnamodel/xraydar-cv](https://huggingface.co/dnamodel/xraydar-cv) · [Code](https://github.com/gmontana/xraydar-cv)
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**Report classifier:** [dnamodel/xraydar-nlp](https://huggingface.co/dnamodel/xraydar-nlp) · [Code](https://github.com/gmontana/xraydar-nlp)
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**Full annotated reports (29,756):** [dnamodel/xraydar-reports](https://huggingface.co/datasets/dnamodel/xraydar-reports)
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## Dataset Structure
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"image_file": "images/1858.png",
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"consensus_labels": ["consolidation", "mediastinum_widened", "unfolded_aorta", "volume_loss"],
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"bounding_boxes": [
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{"label": "consolidation", "annotator": "705", "x_min": 1200, "y_min": 800, "x_max": 1500, "y_max": 1100},
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{"label": "mediastinum_widened", "annotator": "703", "x_min": 700, "y_min": 200, "x_max": 1000, "y_max": 600}
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],
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"report_text": "There is consolidation in the left lower zone...",
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"report_tokens": ["There", "is", "consolidation", "in", "the", "..."],
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| Field | Source | Description |
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|-------|--------|-------------|
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| `consensus_labels` | Two radiologists + adjudication | Agreed image-level findings (37 classes) |
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| `bounding_boxes` | Two radiologists independently | Spatial localisation of findings, with `annotator` ID per box |
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| `report_text` | Historical clinical report | Original free-text report written at time of exam |
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| `report_spans` | Separate annotation team | Token-level finding labels extracted from the report text (45 classes) |
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| `report_labels` | Derived from `report_spans` | Report-level labels (findings mentioned in text) |
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## Data Provenance
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- **Images**: Frontal chest X-rays from three UK NHS hospital networks (2006–2019), extracted from DICOM as anonymised PNGs at native resolution.
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| 137 |
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- **Image annotations**: Produced using the AnnotateX platform. Two experienced radiologists independently annotated each image with finding labels and bounding boxes. Image-level consensus labels were agreed through adjudication with a third senior radiologist. Individual bounding boxes from each annotator are preserved with their annotator IDs.
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- **Report text**: Historical free-text radiology reports associated with each examination.
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- **Report annotations**: 29,756 reports were manually annotated by ten radiologists using the AnnotateX platform, with span-level labels across 45 categories.
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