Christina Theodoris

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New activity in ctheodoris/Geneformer 3 days ago

Question regarding post-perturbation Cell × Embedding matrix extraction

1

#583 opened 3 days ago by

eastmancodes

New activity in ctheodoris/Geneformer about 1 month ago

Setting max_layers_to_freeze overrun in MTLClassifier

5

#581 opened about 1 month ago by

MajorasMeow

Update geneformer/mtl/train.py

1

#582 opened about 1 month ago by

MajorasMeow

A MTLClassifier.load_and_evaluate_test_model error

➕ 1

1

#580 opened about 1 month ago by

c57bl6j

Issue reproducing TTN detection counts in In Silico Treatment Analysis

1

#579 opened about 2 months ago by

LucasACyyy

New activity in ctheodoris/Geneformer about 2 months ago

Genecorpus 30 M annotation

1

#578 opened about 2 months ago by

lorenzocampini

GPU requirements

1

#577 opened about 2 months ago by

lorenzocampini

New activity in ctheodoris/Geneformer 2 months ago

Considerations on Gene symbol and Ensembl ID mapping

1

#576 opened 2 months ago by

lorenzocampini

Ensembl gene ID version used in Geneformer (ENSG)

1

#575 opened 2 months ago by

jenny143

New activity in ctheodoris/Geneformer 3 months ago

use geneformer for mouse data

2

#574 opened 3 months ago by

jenny143

Clarification on label mapping for cardiomyopathy classifier (nf, dcm, hcm)

1

#571 opened 3 months ago by

ro2h5

New activity in ctheodoris/Genecorpus-30M 3 months ago

median computation

1

#26 opened about 1 year ago by

shakeel604

New activity in ctheodoris/Geneformer 3 months ago

problem with get_train_sampler()

1

#572 opened 3 months ago by

scsrsao

problem when running gene_classification.ipynb

2

#573 opened 3 months ago by

jenny143

New activity in ctheodoris/Geneformer 4 months ago

Genecorpus-95M availability

3

#526 opened 10 months ago by

ZhexuanLiu

Clarification on tuning "frozen layers" hyperparameter with RayTune

1

#570 opened 4 months ago by

ro2h5

TypeError in classifier.py

1

#568 opened 4 months ago by

ro2h5

Fix TypeError in make_perturbation_batch_special

1

#567 opened 4 months ago by

so298

Embedding bulk RNA-seq

1

#569 opened 4 months ago by

lorenzocampini

New activity in ctheodoris/Geneformer 5 months ago

Finetuning vs Pretraining Speed

2

#566 opened 5 months ago by

yqsu95