sha256 stringlengths 64 64 | language stringclasses 25
values | size int32 1 210k | lines int32 1 9.41k | content stringlengths 1 200k |
|---|---|---|---|---|
e4db7b1e822a42902ba833e5901a859558f6df753a5240f1e73652caf314defb | C/C++ | 4,104 | 184 | #ifndef MODEL_H
#define MODEL_H
#include <opencv2/core/core.hpp>
#include <QMetaType>
#include <QString>
#include <QColor>
#include <QStringList>
#include <QVector>
#include <QPointF>
#include <vector>
#include <set>
#include <unordered_map>
#include <memory>
#include <variant>
#if QT_VERSION < QT_VERSION_CHECK(5, 14... |
57cf6cd941b4a807bcbe69d3555bcefd0dca0ec77f459ad77dac07b491f063d5 | C/C++ | 4,128 | 156 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_OBJECT_WR... |
48984d51983920fdc40bf1d8e37286ea4268104eb5a03a8aae1efd4f06ed7b1d | C/C++ | 4,175 | 118 | #ifndef UTILS_H
#define UTILS_H
#include <QReadWriteLock>
#include <QString>
#include <QHash>
#include <QMetaType>
#include <unordered_map>
#include <functional>
struct GuiMessage { // modeled after QMessageBox
QString text;
QString informativeText = {};
enum { INFO, WARNING, CRITICAL } type = CRITICAL;
};
struct... |
7aa8b6151a0c051f49dbcd021b2ddc1cea29c2b315e3294e5d29a65f6537e621 | C/C++ | 4,244 | 144 | #ifndef DATASET_H
#define DATASET_H
#include "utils.h"
#include "model.h"
#include "proteindb.h"
#include <QObject>
#include <QFlags>
#include <QMap>
#include <QList>
#include <set>
#include <map>
#include <memory>
namespace annotations { class Meanshift; }
class QTextStream;
// a configuration that describes proc... |
38464aff388cfe528d3cfcafa0edc577626d08a9f69356aade7d6d97546e5d66 | C/C++ | 4,250 | 121 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
e3f9dc7caa0d326b1917f8bf671a5a874da30d346854e8b17e2b3b59fde042f5 | C/C++ | 4,253 | 121 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
ca3b19c13bdbefbd2477a9aad07302c6c46c181f7ac9e38e7274c9666d5e4f9f | C/C++ | 4,649 | 162 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
f24fe1a99fe9ffd3b9858bbaf72642fbcb82843cc809894272d54ab52045ee7c | C/C++ | 4,652 | 162 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
c62d395afec5a2df976e43790c4f8f8c516a8d1b5b29aea27304aba91c2dd261 | C/C++ | 4,748 | 130 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
8e3090f0c7b769d97dcece2515cd4be8fd633c66440c66ef99fb6323da8b9905 | C/C++ | 5,641 | 197 | /* config.h. Generated by configure. */
/* config.h.in. Generated from configure.ac by autoheader. */
/* Temporary manual alteration to test dcm_pet */
/* Define to 1 if you have the <dirent.h> header file, and it defines `DIR'.
*/
#define HAVE_DIRENT_H 1
/* Define to 1 if you don't have `vprintf' but do have... |
f2987bc88debb99943db5c3c253b5dce02f81fee602564ce0987e22789b672d3 | C/C++ | 5,703 | 198 | /* config.h. Generated from config.h.in by configure. */
/* config.h.in. Generated from configure.ac by autoheader. */
/* Define to 1 if you have the <dirent.h> header file, and it defines `DIR'.
*/
#define HAVE_DIRENT_H 1
/* Define to 1 if you don't have `vprintf' but do have `_doprnt.' */
/* #undef HAVE_DOPR... |
db8990e9fd1c1fef3a354f9e8ecb0830a41be9ac5f6754af520252f513c046b9 | C/C++ | 5,772 | 166 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_JSON_H_
#... |
f502353164d1538f8059c2cf999e55fa462e38cdb15ae97f94af0aaed51e58d2 | C/C++ | 6,157 | 242 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_PERSISTEN... |
488072b67cc400f0c59bd81cf3ee316a17b7bdb114ed2690a809792d930b4fd7 | C/C++ | 6,249 | 130 | /*
Copyright (C) 2010 Washington University
*/
/* Copyright marker. Copyright will be inserted above. Do not remove */
/*
** Neuro Imaging Laboratory
** Mallinckrodt Institute of Radiology
** Washington University School of Medicine
**
** Last Update: $Author: $
** Source File: $RCSfile: ... |
e977374d90ea3abd0a160bb149607990c52b52ca58eed98c35060b4e4db5a9ac | C/C++ | 6,438 | 190 | /* constants */
#define NGRAY 4096 /* number of gray levels */
#define DY 256 /* y displacement = no. cols */
#define DY2 512 /* y displacement = no. cols */
#define DZ 65536 /* z displacement = no. 2D pixels */
#define M 1.5 /* power coefficient */
#define SPAN 15 ... |
a128293f1802bbe309c11e2764f2a5d1fad9c7dd90eea9dbf7d046da481f8195 | C/C++ | 7,161 | 268 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_MAYBE_PRE... |
828197e9f3353e32cd3b52454c51a27ac4188b4bb4e1c71a6e99ce0fb83b1bb9 | C/C++ | 7,357 | 207 | #include "mex.h"
#include <math.h>
#include <string.h>
/* 3D Point Structure */
typedef struct {
int x;
int y;
int z;
} point3d;
/* Chamfer Mask Structure */
typedef struct {
int x;
int y;
int z;
double v;
} mask;
/* Bucket Structure */
typedef struct {
point3d *pt;
int size;
... |
e6e43f7698b8ea7129013f41f22cf2980f1205163ab8c8a196e36c38514c30c1 | C/C++ | 7,890 | 260 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
09bcabcf7d99588c375545a7e6862374e717f5bdd7f6387b2c76377863b7817b | C/C++ | 7,943 | 263 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_IMPLEMENT... |
e06ce2cde16826c454691f8f310c3562ddc0d560f132db2fe61b3cb6dd29f101 | C/C++ | 8,102 | 305 | // Copyright Joyent, Inc. and other Node contributors.
//
// Permission is hereby granted, free of charge, to any person obtaining a
// copy of this software and associated documentation files (the
// "Software"), to deal in the Software without restriction, including
// without limitation the rights to use, copy, modi... |
c37108a5fa254b57f839eae7d1e5c545d52aace6638a07acfac0e1cc0f165812 | C/C++ | 8,170 | 272 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
3decf3cb7dda896b3429f02181cac77cecebe73ecc9dc1d11c3e726d276c35bf | C/C++ | 8,241 | 287 | /////////////////////////////////////////////////////////////////////////////
// Name: fams.h
// Purpose: fast adaptive meanshift class and struct
// Author: Ilan Shimshoni
// Modified by: Bogdan Georgescu
// Created: 08/14/2003
// Version: v0.1
//////////////////////////////////////////////////... |
ee50ee4833335788c1c2ceff53be9eceb4b593e1244fe7a35a545d11e8be4dfc | C/C++ | 8,384 | 377 | // Copyright (c) Facebook, Inc. and its affiliates.
#pragma once
#include <torch/types.h>
namespace detectron2 {
#if defined(WITH_CUDA) || defined(WITH_HIP)
int deform_conv_forward_cuda(
at::Tensor input,
at::Tensor weight,
at::Tensor offset,
at::Tensor output,
at::Tensor columns,
at::Tensor o... |
11fbc38eb49cb6f3c142022c5b47bccc6a18047ad7d509af011feee48f02d7fd | C/C++ | 8,786 | 340 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_NEW_H_
#d... |
9a641b1f32dddee57894f8d91989e0cbe2b9e90c997f4b1a89b02ee447644e0f | C/C++ | 9,907 | 264 | // morphology.h : Handles generation and storage of neuron positions.
#pragma once
#include "defines.cuh"
#include <ANN/ANN.h>
#define GLM_FORCE_RADIANS
#include <glm/glm.hpp>
#include "regions_tree.h"
//! Morphology is an abstract class that supports morphology generation
//! and operations such as union, ... |
8540cf5a4652ce8c1b3e9f98aa277c0920c7778f4356545b73df70547b684a0b | C/C++ | 11,339 | 392 | // Copyright (c) Facebook, Inc. and its affiliates.
#pragma once
#include <cassert>
#include <cmath>
#if defined(__CUDACC__) || __HCC__ == 1 || __HIP__ == 1
// Designates functions callable from the host (CPU) and the device (GPU)
#define HOST_DEVICE __host__ __device__
#define HOST_DEVICE_INLINE HOST_DEVICE __forcei... |
16ddb5f6548415e61921e254de27f5acc6e5a02a061ea65498b816904df39f44 | C/C++ | 12,330 | 264 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
f9f95d9ed8373585614cf11d8efc8fc80a0910af5a88191cee2fec45ca558ca4 | C/C++ | 12,333 | 264 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
e79a940c0641672fcc463d5eb73e1fa017e5b7b2c13ec1d492ed98efb0830001 | C/C++ | 12,375 | 356 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_MAYBE_43_... |
7ddff7c5e82c601a6cab39785be4fc84d2f3513e0c2e731a90f5c9f3eb9b2546 | C/C++ | 15,054 | 430 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_IMPLEMENT... |
2303a6f5ba881d000511cf698adffd8bd8c448ba8fece209b9d503825cdd95f0 | C/C++ | 15,354 | 437 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_WEAK_H_
#... |
38d1d686ba458e3af2da8874b31d69672648830f173fa0b6367a83f54442c90f | C/C++ | 17,085 | 520 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_CALLBACKS... |
312004e83ea9cc142952b7673dbd8ad69318dcd933e0edef6f572479faecbdd6 | C/C++ | 17,388 | 477 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
8c1a2088333301f5ea3cf6f8c8d4d33ff3efc506163d85d6c175517f7618da1f | C/C++ | 17,536 | 514 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors
*
* MIT License <https://github.com/nodejs/nan/blob/master/LICENSE.md>
********************************************************************/
#ifndef NAN_CALLBACKS... |
16791e20a155545543927100e6ba9953db9bd244890ad96415042294bab8de77 | C/C++ | 24,514 | 710 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
2b7bbb89afb97150f53d1afbd27a6a0f0387db4dd3151a98c1da24072f820ee3 | C/C++ | 25,481 | 512 | /*------------------------------------------------------------------------------------------------*/
// Project: Amplifier Windows Library
/*------------------------------------------------------------------------------------------------*/
// Purpose: Harware access library for the Brain Products amplifiers
// Auth... |
f7a019211d8c6124a93bdb68abb3a7551bacaebd560ff707b31d0934d0746861 | C/C++ | 25,526 | 514 | // Copyright (C) 2019 Brain Products GmbH
/*------------------------------------------------------------------------------------------------*/
// Project: Amplifier Windows Library
/*------------------------------------------------------------------------------------------------*/
// Purpose: Harware access library... |
b47cb0b6f0fd8ef4238ca226a0d04a6745b1d37e8ef5ce645a5c1bc0c6d0bb74 | C/C++ | 70,273 | 1,521 | /*$Header: /data/petsun4/data1/src_solaris/nifti_4dfp/RCS/nifti1.h,v 1.2 2010/06/18 21:00:59 coalsont Exp $*/
/*$Log: nifti1.h,v $
* Revision 1.2 2010/06/18 21:00:59 coalsont
* added define checks to avoid __attribute__ on non-gcc compilers
*
* Revision 1.1 2009/07/08 00:56:33 coalsont
* Initial revision
**... |
13ac73280e04365a24efce9187d908ab9790595292635fe722a72bdeb8142845 | C/C++ | 88,149 | 2,898 | /*********************************************************************
* NAN - Native Abstractions for Node.js
*
* Copyright (c) 2018 NAN contributors:
* - Rod Vagg <https://github.com/rvagg>
* - Benjamin Byholm <https://github.com/kkoopa>
* - Trevor Norris <https://github.com/trevnorris>
* - Nathan Rajl... |
0433e22d3bc01602b359cdd42d24d17dffbcb86b691a626f3499bdf7c7c088a4 | C/C++ | 94,998 | 1,704 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
52c179cc8d338c4186d645a87d2223f95eadfcad0284cf8f8003c2c5a18bd02a | C/C++ | 95,000 | 1,704 | /*
Copyright (C) 1993, 1994, RSNA and Washington University
The software and supporting documentation for the Radiological
Society of North America (RSNA) 1993, 1994 Digital Imaging and
Communications in Medicine (DICOM) Demonstration were developed
at the
... |
987c697291f07794cddf441a0d7b5fed718654912917d5d26052be65bc8de813 | CUDA | 622 | 26 | // Copyright (c) Facebook, Inc. and its affiliates.
#include <cuda_runtime_api.h>
namespace detectron2 {
int get_cudart_version() {
// Not a ROCM platform: Either HIP is not used, or
// it is used, but platform is not ROCM (i.e. it is CUDA)
#if !defined(__HIP_PLATFORM_AMD__)
return CUDART_VERSION;
#else
int versi... |
a84cc2f9a04dbc2ba2accabd9b210bbc0877068ebe83a4808c477226b583676d | CUDA | 1,965 | 66 | #include "defines.cuh"
#include <ctime>
std::default_random_engine& RandomEngineFixedSeed(int seed)
{
// This random engine is seeded with the same value every time.
// This means that randomness will be THE SAME between runs.
static std::default_random_engine gen(seed);
return gen;
}
std:... |
896ea23f033cd45af459c45e8c6727be2edae3b9099a2f169bd6a2952f138d03 | CUDA | 4,454 | 130 | // Copyright (c) Facebook, Inc. and its affiliates.
#include <ATen/ATen.h>
#include <ATen/cuda/CUDAContext.h>
#include <c10/cuda/CUDAGuard.h>
#include <ATen/cuda/CUDAApplyUtils.cuh>
#include "box_iou_rotated_utils.h"
namespace detectron2 {
// 2D block with 32 * 16 = 512 threads per block
const int BLOCK_DIM_X = 32;
c... |
8f14408b42307d21f338ab490307ed8fb87293e66d1fea8042ff4501c00f502e | CUDA | 4,648 | 126 | #include "electrode_net.cuh"
inline __global__ void electrodes_measure_kernel (
int const N_regions,
int const* regions,
int const* region_offsets,
Float* output,
Float const* V,
int* firing_per_region,
int const* is_firing)
{
for (int tid = blockIdx.x * blockDim.x + threadI... |
1176f9223426e87efd32eab0a5517932be1b05ea5add318460bdeac15fdf79b2 | CUDA | 4,859 | 145 | // Copyright (c) Facebook, Inc. and its affiliates.
#include <ATen/ATen.h>
#include <ATen/cuda/CUDAContext.h>
#include <c10/cuda/CUDAGuard.h>
#include <ATen/cuda/CUDAApplyUtils.cuh>
#ifdef WITH_CUDA
#include "../box_iou_rotated/box_iou_rotated_utils.h"
#endif
// TODO avoid this when pytorch supports "same directory" hi... |
6f9b4a1037f289403cbcb2af0eb351b2de69d4616cbcf01b9c6f8cecd2a5d2cd | CUDA | 4,912 | 117 | #include "mouse_cortex.cuh"
//std::string MouseCortex::excitatory_conns_file_name = "isocortex_rho_1000_new.h5";
//std::string MouseCortex::conns_file_name = "Isocortex_hemisphere_675K_rho299_new.h5";
//std::string MouseCortex::inhibitory_conns_file_name = "Isocortex_hemisphere_675K_rho299_new.h5";
//int MouseCor... |
2b56694ee58f2ffb74e38b58ccfe598e724f681987294bafab669cc07ec38ee0 | CUDA | 5,449 | 148 | #include "coupling.cuh"
Float AtomicCoupling::threshold = 0.01;
AtomicCoupling::AtomicCoupling(int const N, AdjacencyList& list_, Float* downstream_inputs_, Float* neuron_outputs_)
: list{}, downstream_inputs{ downstream_inputs_ }, neuron_outputs{ neuron_outputs_ }, is_firing(N, 0), firing_neurons(N, -1)
{
... |
6275ae03f9741aadb64c3d2ca86c9ef47ea75662c12d6819021481b57b650625 | CUDA | 8,868 | 265 | #define _USE_MATH_DEFINES
#include "network_factory.cuh"
#include <unordered_set>
AdjacencyList Network::ToAdjacencyList(Float*& Tcount, Float const* EI_INFO, Float ei_network, bool use_weights) const
{
// Generate coupling
AdjacencyList list;
list.indices = indices;
list.offset_in_indices = offset_... |
faa034abf9fe31405d01b4ba635e047bc78b327cc4e5f71e5372717fd499ef1a | CUDA | 13,080 | 526 | // Copyright (c) Facebook, Inc. and its affiliates.
#include <ATen/ATen.h>
#include <ATen/cuda/CUDAContext.h>
#include <c10/cuda/CUDAGuard.h>
#include <ATen/cuda/CUDAApplyUtils.cuh>
// TODO make it in a common file
#define CUDA_1D_KERNEL_LOOP(i, n) \
for (int i = blockIdx.x * blockDim.x + ... |
477940208dce6e0aebc14a4035e8c9beb8c821217a9d75d8649c51201e9cccbd | CUDA | 13,914 | 445 | // Copyright (c) Facebook, Inc. and its affiliates.
#include <ATen/ATen.h>
#include <ATen/cuda/CUDAContext.h>
#include <c10/cuda/CUDAGuard.h>
#include <ATen/cuda/CUDAApplyUtils.cuh>
// TODO make it in a common file
#define CUDA_1D_KERNEL_LOOP(i, n) \
for (int i = blockIdx.x * blockDim.x + ... |
ed26badc63412ae1b257bb19a09bb0f34aa5ce0a7691b77da8049816e260be1a | CUDA | 19,318 | 403 | #include "ephys.cuh"
# define M_PI 3.14159265358979323846 /* pi */
Ephys::~Ephys()
{
for (Float*& dev_ptr : sim_vars_cpu)
cudaFree(dev_ptr);
}
HHEphys::HHEphys(int const N_)
: Ephys(N_, HH::leapfrog_dt)
{
using namespace HH;
// Set up simulation variables. Stored in a str... |
0a514d7ba944af3663386dd224fbc3698fc9a79474fb5b9bbda5e311de2f4eb2 | CUDA | 28,036 | 626 | #include "mouse_cortex.cuh"
#include <set>
#include <glm/gtx/norm.hpp>
#include <glm/gtc/type_ptr.hpp>
#include "regions_tree.h"
#include <iostream>
#include <sstream>
#include <string>
#include <thrust/random.h>
#include <thrust/iterator/counting_iterator.h>
#include <thrust/iterator/zip_iterator.h>
#includ... |
a10f559b9664f83de2da3096a07994f104c4cea4e36b18cd8b00fed039b32ed1 | CUDA | 31,785 | 1,223 | // Copyright (c) Facebook, Inc. and its affiliates.
// modified from
// https://github.com/open-mmlab/mmdetection/blob/master/mmdet/ops/dcn/src/deform_conv_cuda.cpp
// Original license: Apache 2.0
// modify from
// https://github.com/chengdazhi/Deformable-Convolution-V2-PyTorch/blob/mmdetection/mmdet/ops/dcn/src/defo... |
22bffd1646514554fe7eb375e1687e40c1e8d652f544be57701cc7ee7364f147 | CUDA | 44,282 | 1,288 | // Copyright (c) Facebook, Inc. and its affiliates.
// modified from
// https://github.com/open-mmlab/mmdetection/blob/master/mmdet/ops/dcn/src/deform_conv_cuda_kernel.cu
// Original license: Apache 2.0
// clang-format off
// modify from
// https://github.com/chengdazhi/Deformable-Convolution-V2-PyTorch/blob/mmdetect... |
67c77321609f560a447e30bcf7f2593084e019d68dfcf8969b67ca78cb5e07df | Go | 170 | 10 | package settings
import (
"fmt"
"path/filepath"
)
func executableForPid(pid int) (string, error) {
return filepath.EvalSymlinks(fmt.Sprint("/proc/", pid, "/exe"))
}
|
2bc078e3b8407d571890d59e73ea89c074f9a7fcfa23dbff65c7fd402df0a5f3 | Go | 220 | 10 | package fastq
var INVALID_SAMPLE_INDEX = []byte("X")
const READ1_TYPE = "R1"
const READ2_TYPE = "R2"
const INTERLEAVED_READ_TYPE = "RA"
const INDEX1_TYPE = "I1"
const INDEX2_TYPE = "I2"
const DUAL_INDEX_TYPE = "I1_I2"
|
a606b945d6b761f7e223f0c2659d772defb3eac451687e965c0b256177405ac3 | Go | 225 | 11 | package collector
func MakeFileSize(paths []string, isCount bool) ValueExtractor {
// TODO
panic("not implemented")
}
func MakeFileSizeFlag(flag string, isCount bool) ValueExtractor {
// TODO
panic("not implemented")
}
|
930900ad96459406b58cd90f889ea711041e88de32e39ddc37568ed16041c83a | Go | 435 | 17 | package collector
// #include <gnu/libc-version.h>
import "C"
import "context"
type glibcExtractor struct{ simpleExtractor }
func (glibcExtractor) MarshalJSON() ([]byte, error) {
return []byte(`{"special":"glibc"}`), nil
}
// Start implements ValueExtractor.
func (glibcExtractor) Start(_ context.Context, _ ValueCo... |
bd72fc63c5165b62b2f8e031373abd83d95aa594ea0c9f8aabb8aca4202c4b95 | Go | 579 | 31 | package collector
import (
"context"
"encoding/json"
"os"
)
type envExtractor struct {
simpleExtractor
varName string
}
func (e *envExtractor) MarshalJSON() ([]byte, error) {
b, err := json.Marshal(e.varName)
if err != nil {
return nil, err
}
return append(append([]byte(`{"env":`), b...), '}'), nil
}
fun... |
e8a4e4449bcb05d9347d2eb45489f4eca19dc297d9864d796073f6751f729834 | Go | 648 | 35 | package converter
import (
"encoding/json"
"fmt"
"github.com/10XDev/cellranger/lib/go/multi_csv"
)
type Converter interface {
json.Marshaler
Convert(b []byte) ([]byte, error)
}
type multicsv struct{}
func (multicsv) Convert(b []byte) ([]byte, error) {
return multi_csv.ConvertMultiConfig(b)
}
// MarshalJSON ... |
0b26f8dceb39169804a89586fec3f6e36ded2c80e78131abcbe73ef04e4ec04d | Go | 687 | 29 | package collector
import "context"
// MakeRecentCounter returns a ValueExtractor to count recent events
// from the given group.
func MakeRecentCounter(group string) ValueExtractor {
return &recentCountExtractor{groupName: group}
}
type recentCountExtractor struct {
simpleExtractor
groupName string
}
func (recen... |
6a4adffc6317742b140d33de16c1451e0c212ef0a3aba628acc6a1c688c872cf | Go | 867 | 48 | package collector
import (
"context"
"encoding/json"
"golang.org/x/sys/unix"
)
type rlimitCollector struct {
simpleExtractor
resource int
hard bool
}
func (r *rlimitCollector) MarshalJSON() ([]byte, error) {
return json.Marshal(struct {
Res int `json:"rlimit"`
Hard bool `json:"hard,omitempty"`
}{
... |
7a79fa84b832800fd46ca931502f66593632512c0563f3d65698b87adb01f8f6 | Go | 1,076 | 42 | // Copyright (c) 2024 10x Genomics, Inc. All rights reserved.
// Command sitecheck generates a telemetry report about a system's capabilities.
//
// Use care when making changes here, to avoid collecting privacy-sensitive
// information.
//
// Also, avoid making changes to the formatting of the output, as we have tool... |
957d4c56e707afb08aef1f1a798b475f88f34b7242f730774d62187e2f4e8062 | Go | 1,192 | 59 | package collector
import (
"context"
"encoding/json"
"os"
"strings"
)
type flagExtractor struct {
simpleExtractor
flag string
mro bool
}
func (f *flagExtractor) MarshalJSON() ([]byte, error) {
b, err := json.Marshal(f.flag)
if err != nil {
return nil, err
}
if f.mro {
return append(append([]byte(`{"m... |
9158fef8db339939deb99b7867ce65d147478d7a6bbf2a3356b13b0cdd067fa3 | Go | 1,309 | 68 | package fastq
import (
"container/list"
)
type OrderedMapElement struct {
value interface{}
key string
}
type OrderedMap struct {
m map[string]*list.Element
l list.List
}
func (m *OrderedMap) Init(size int) {
m.l.Init()
m.m = make(map[string]*list.Element, size)
}
func (self *OrderedMap) HasKey(key string... |
6e37d18b0322c5a53b73b226e3f2f85cd5b58930a8ac62d50601721ff05e21a2 | Go | 1,737 | 65 | // Package multi_csv allows conversion from multi config csv to json.
//
// It is implemented as a go binding to the rust code.
package multi_csv
/*
long long convert_multi_config(
char *buffer,
unsigned long buf_len,
const char *input,
unsigned long input_len
);
*/
import "C"
import (
"fmt"
"runtime"
"unsafe"
... |
2c2ec71b19e590a5d6bc9a2a34a57d86d57dc85f2a4bffc4570518aedafcf764 | Go | 1,761 | 62 | // https://play.golang.org/p/ZdFpbahgC1
// Go's `math/rand` package provides
// [pseudorandom number](http://en.wikipedia.org/wiki/Pseudorandom_number_generator)
// generation.
//go run scripts/atomtest.go
//81,87
//0.6645600532184904
//7.1885709359349015,7.123187485356329
//27,98
//5,87
//5,87
package main
import "t... |
20097e7f3ac0ce991f360201b5decae4bb2f7467ac78631476e9702d1cc19912 | Go | 1,884 | 91 | package collector
import (
"fmt"
"regexp"
"strings"
)
type FileFilter interface {
// We've only got two implementations of this
// interface, and we want to keep them private to
// this package, because to be efficient, they
// have to be special-cased regardless.
isJson() bool
}
type JsonPathFilter []string... |
835ee4e739945bccfd511b778fbf83f2eb5c8ff7a78d94c323ff17da8f0a1b24 | Go | 1,920 | 86 | package settings
import (
"errors"
"fmt"
"io/fs"
"os"
"os/user"
"path"
"path/filepath"
"time"
)
// CacheDir returns the path to the directory containing previously
// collected data.
func CacheDir() (string, error) {
c, err := os.UserCacheDir()
if err != nil {
// os.UserCacheDir can fail if $HOME isn't se... |
4a26429c139504dc525432c551df57c54a60e6eb18aa7defaf5bff0ca549f0bb | Go | 2,059 | 96 | package config
import (
"bytes"
"encoding/json"
"sort"
)
// In a few places, for convenience we allow
// either a list or a string, where we want the string
// to be interpreted as a singleton list.
type StringOrList []string
func (sl *StringOrList) UnmarshalJSON(b []byte) error {
if len(b) == 0 {
*sl = nil
... |
0e8542d7d96c5c88fb90cb069734b62e6f84bff84cbdbb960381544ee66f91be | Go | 2,288 | 97 | // Command telemetry_converter is used to convert from yaml to json.
//
// It will also validate the config file.
//
// The command does not accept any command-line flags.
// It reads from stdin and writes to stdout.
package main
import (
"bytes"
"encoding/json"
"flag"
"fmt"
"io"
"os"
"strconv"
"time"
"githu... |
47647d48b3eba810d0f0517addffc8f30bbbc9778c228e141e44301a93a2bba8 | Go | 2,821 | 90 | package collector
import (
"context"
"encoding/json"
"time"
)
// This allows e.g. command line flags to be passed in to
// the value extractor.
type ValueContext interface {
CommandLine() []string
MroFlags() []string
PipestanceDir() string
Runtime() time.Duration
MrpHasRun() bool
Success() bool
RecentCount(... |
bace2891f81587ada4e0ee911ba2e7dddefb8563b140a6cd3c82ec6720f0cafc | Go | 3,069 | 154 | package collector
import (
"bytes"
"context"
"encoding/json"
"os"
"path"
"runtime/trace"
)
func doCgroups(ctx context.Context,
requests map[string][]cgroupRequest, mounts <-chan map[string]string) {
defer trace.StartRegion(ctx, "doCgroups").End()
groupFile, err := os.ReadFile("/proc/self/cgroup")
if err != ... |
2ec64a60466a8efd2091d8624b767f264fc87a2cf9a739363a5b754c5150ab7b | Go | 3,092 | 124 | package collector
import (
"context"
"io/fs"
"golang.org/x/sys/unix"
)
type fileResult struct {
info fs.FileInfo
fullPath string
relPath string
}
type errorFile struct {
path string
content string
}
type cgroupRequest struct {
result chan<- []byte
names []string
}
// In order to facilitate havi... |
e1d325aceb45388ce27fa72469c6a0cd839f1346c876e0315aab073989be652f | Go | 3,103 | 98 | package config
import (
"time"
)
type Config struct {
ConfigVersion int `json:"config_version"`
ConfigTime time.Time `json:"config_version_time"`
Product string `json:"product"`
Version string `json:"versio... |
48f2156457fdde52f5e256008276a81efa9a1123aef154002d4a97be1bd1ae97 | Go | 3,166 | 131 | // Package value_context parses the command line for the telemetry tool.
//
// The results are used to provide context for collection of telemetry
// information.
package value_context
import (
"flag"
"os"
"strings"
"sync"
"time"
"github.com/10XDev/cellranger/lib/go/telemetry/collector"
"github.com/martian-lan... |
3a974f85e571e8a6fb97e81239c626d9717028ef5b0689e1449151a216e3352e | Go | 3,403 | 121 | package collector
import (
"context"
"encoding/json"
"fmt"
"sort"
"github.com/martian-lang/martian/martian/core"
"github.com/martian-lang/martian/martian/syntax"
)
// A collector that parses the _perf file and emits top N stage metrics.
//
// Reports the top 5 stages in terms of wall time (longest fork), RSS
/... |
7b973262f3adb25dcda132ca0e7a880ea4fe7087ee83435a14abad7d4dd021e4 | Go | 4,336 | 185 | package collector
import (
"bytes"
"context"
"fmt"
"path"
"regexp"
"strings"
"golang.org/x/sys/unix"
)
func MakeSpecial(name string) (ValueExtractor, error) {
switch name {
case "glibc":
return glibcExtractor{}, nil
case "kernel":
return kernelExtractor{}, nil
case "subcommand":
return new(subcomman... |
d679683d6d227f974404e48252e248f7844c39a753a44fb630c0b64654a55247 | Go | 4,347 | 210 | package collector
import (
"bytes"
"context"
"io"
"os"
"path"
"path/filepath"
"strings"
"github.com/google/shlex"
)
type distroExtractor struct{ noBucketsExtractor }
func (distroExtractor) MarshalJSON() ([]byte, error) {
return []byte(`{"special":"distro"}`), nil
}
func (d *distroExtractor) Start(ctx cont... |
40a7edfb3c0a18a795f9c98c311e67b33fc4a24c5b95c3fd8fc8348a379d83eb | Go | 5,256 | 196 | // Copyright (c) 2024 10x Genomics, Inc. All rights reserved.
// Package sitecheck implements a function for generating sitecheck telemetry file.
package sitecheck
import (
"context"
"fmt"
"io"
"os"
"sort"
"sync"
"time"
)
type siteCheckSection struct {
// Title of the section, e.g. "System Information"
Sect... |
70d1e466402509031602bc62b30e431a870eaa663ecbc47461a87f0055acaa6a | Go | 5,791 | 229 | // Package event defines a telemetry event type and code for collecting them.
package event
import (
"context"
"fmt"
"io"
"io/fs"
"maps"
"os"
"runtime/trace"
"sort"
"sync"
"github.com/10XDev/cellranger/lib/go/telemetry/collector"
"github.com/10XDev/cellranger/lib/go/telemetry/config"
)
type Event struct {... |
d0450eb7fac2007f1631ac73bb752868e01d0b804f3a8ad205c9284c11789655 | Go | 7,100 | 269 | package config
import (
"errors"
"fmt"
"path"
"strings"
"unicode"
"unicode/utf8"
"github.com/10XDev/cellranger/lib/go/telemetry/collector"
"github.com/10XDev/cellranger/lib/go/telemetry/converter"
"golang.org/x/sys/unix"
)
func getSpecialSource(name string) (ValueExtractor, error) {
return collector.MakeSp... |
75c20b1696ecfd61e15d3192456646d11bcebd6c4fb449587dae5291509c297b | Go | 7,706 | 339 | package collector
import (
"bufio"
"bytes"
"context"
"encoding/json"
"os"
"path"
"runtime/trace"
"strconv"
"strings"
"sync"
"syscall"
"golang.org/x/sys/unix"
)
func doStatfs(ctx context.Context, p string, cs []chan<- unix.Statfs_t) {
defer trace.StartRegion(ctx, "doStatfs").End()
for _, c := range cs {... |
74507888566a1fd3e96e92b74bdb5054901e2ab8e9a58b859b65369a6ad88ffc | Go | 8,741 | 337 | package settings
import (
"bytes"
"context"
"crypto/sha256"
"encoding/base64"
"encoding/json"
"errors"
"fmt"
"io"
"net/http"
"os"
"path"
"regexp"
"runtime/trace"
"strings"
"sync"
"time"
"github.com/10XDev/cellranger/lib/go/telemetry/event"
)
type eventPayload struct {
content []byte
product string... |
c28ceeb56da73feb13ea1346bb61f78b054d68be2809fc5150257c44af42137f | Go | 9,944 | 328 | // Copyright (c) 2014 10X Genomics, Inc. All rights reserved.
// Tenkit sample index demultiplexer.
package main
import (
"context"
"encoding/json"
"errors"
"io"
"log"
"os"
"runtime/pprof"
"runtime/trace"
"strconv"
"github.com/10XDev/cellranger/lib/go/tenkit/fastq"
docopt "github.com/martian-lang/docopt.... |
f4cba15762af8ae90abd46a1bae799494fd01e6ff34db29e7bf3280067254a52 | Go | 10,367 | 442 | package fastq
import (
"bufio"
"fmt"
"io"
"log"
"os"
"os/exec"
"path/filepath"
"strings"
"syscall"
)
const GZIP_COMPRESSION_LEVEL = 6
func RC_NUCS(b byte) byte {
switch b {
case 'A':
return 'T'
case 'C':
return 'G'
case 'G':
return 'C'
case 'T':
return 'A'
case 'N':
return 'N'
}
return 0
}... |
9c7a1427158fcd1ba4dd568048de21952b59b0c2b9037054d60e82bb9cd8ad6d | Go | 10,599 | 415 | package config
import (
"context"
"crypto/sha256"
"encoding/json"
"errors"
"fmt"
"path/filepath"
"strings"
"sync"
"time"
"github.com/10XDev/cellranger/lib/go/telemetry/collector"
)
type CompiledConfig struct {
ConfigVersion int `json:"config_version"`
ConfigTime time.Time `json:"config_time"`
P... |
9c2b9c95d6df3e8418ea0905ae00d87a8ef8b2b577ace28d79dfad0d20e3b538 | Go | 12,508 | 485 | // Command telemetry collects and transmits usage statistics for the product.
package main
import (
"bytes"
"context"
"encoding/json"
"errors"
"flag"
"fmt"
"io"
"io/fs"
"os"
"path"
"regexp"
"runtime/pprof"
"runtime/trace"
"sort"
"strings"
"time"
"github.com/10XDev/cellranger/lib/go/telemetry/event"
... |
af1dd89ef6b64fc365a3de983c4aaeb74090259da77d5a1ea1b52d1afbc583a9 | Go | 13,160 | 600 | package config
import (
"bytes"
"cmp"
"encoding/json"
"errors"
"fmt"
"math"
"regexp"
"slices"
"sort"
"strconv"
"strings"
)
func nTrue(b ...bool) int {
n := 0
for _, v := range b {
if v {
n++
}
}
return n
}
func (pc *BucketSpec) compile(name string) (Bucketizer, error) {
// Ensure we have exact... |
22ab77e24ded2fa8007068a8efacbb016c850d2bb1bb257adf9831edccccf9ac | Go | 15,459 | 548 | // Package settings provides global persisted settings access the telemetry.
//
// Logic for interacting with on-disk configuration and result files,
// as well as remote URL endpoings, is all contained here.
package settings
import (
"bytes"
"context"
"encoding/json"
"errors"
"fmt"
"io"
"io/fs"
"net/http"
"o... |
4a6392108670cdc92109565399da1eca33dee71f21b602d8bff6e2355ef1cdb4 | Go | 20,161 | 904 | package collector
import (
"archive/zip"
"bufio"
"bytes"
"context"
"encoding/json"
"errors"
"fmt"
"io"
"io/fs"
"os"
"path"
"path/filepath"
"regexp"
"runtime/trace"
"sort"
"strings"
"sync"
"github.com/10XDev/cellranger/lib/go/telemetry/converter"
)
var chunkDirNameRe = regexp.MustCompile(
`^(?:(?:c... |
ac47d29c6411ada38ea9caa63145acc4539774d65b01827072cdd47812b109ad | Go | 25,409 | 993 | // Copyright (c) 2024 10x Genomics, Inc. All rights reserved.
package sitecheck
import (
"bufio"
"bytes"
"context"
"errors"
"fmt"
"os"
"os/exec"
"path"
"path/filepath"
"regexp"
"runtime"
"sort"
"strconv"
"strings"
"syscall"
"time"
"golang.org/x/sys/unix"
)
// #include <gnu/libc-version.h>
import "C... |
637f1a8558dbbc5e8d0153f5af9b8a0c0256e8717361dee65c2fb4b3755ec411 | Java | 645 | 27 |
package bar;
import org.scijava.plugin.Parameter;
import org.scijava.plugin.Plugin;
import org.scijava.script.ScriptService;
import org.scijava.service.AbstractService;
import org.scijava.service.Service;
import net.imagej.ImageJService;
@Plugin(type = Service.class)
public class BARService extends AbstractService ... |
8102306bd7b2a66a7b9bb593eb9df3055bc79818373ff2e1febac5ccfa8162b7 | Java | 792 | 35 | package bar;
import net.imagej.ops.AbstractOp;
import org.scijava.ItemIO;
import org.scijava.plugin.Attr;
import org.scijava.plugin.Parameter;
import org.scijava.plugin.Plugin;
@Plugin(type = BAR.GCD.class, name = BAR.GCD.NAME, attrs = { @Attr(name = "aliases", value = BAR.GCD.ALIASES) })
public class DefaultGCD ext... |
0a35df952a2a12263ae5af9cacd60354d488ca809a75fdb4bef103f3885e9a3b | Java | 1,054 | 38 | /*
* Based on code snippet from
* http://java.sun.com/developer/technicalArticles/releases/data/
*
* Copyright © 2008, 2010 Oracle and/or its affiliates. All rights reserved. Use is subject to license terms.
*/
import java.awt.image.BufferedImage;
import java.awt.datatransfer.*;
public class ImageSelec... |
354fb40d39769910267c7cd64f4d6f52f44d1b0eb24550403841141fedf2a402 | Java | 1,443 | 57 | package bar;
import net.imagej.ops.AbstractNamespace;
import net.imagej.ops.Namespace;
import net.imagej.ops.Op;
import net.imagej.ops.OpMethod;
import org.scijava.plugin.Parameter;
import org.scijava.plugin.Plugin;
import org.scijava.script.ScriptService;
@Plugin(type = Namespace.class)
public class BAR extends Abs... |
5f79bd09292fd22cfdda34d2c62effcffbaddd32fbddbf07d86e00b5041106ef | Java | 1,759 | 41 | import java.util.TimeZone;
/**
*
* @author [email protected]
*/
public class time {
/**
* @param args the command line arguments
*/
public static void main(String[] args) {
// TODO code application logic here
long time1= (System.currentTimeMillis());
System.... |
ab78917f27dae86fb8480ab55078ff2e7ec048621377a76614e55a804ad89134 | Java | 2,472 | 84 | /**
*
*/
package org.janelia.saalfeldlab.transformhelpers;
import java.nio.file.Files;
import java.nio.file.Paths;
import java.util.concurrent.Callable;
import java.util.stream.Stream;
import org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader;
import org.janelia.saalfeldlab.n5.imglib2.N5DisplacementField;
import ch.syst... |
033138475c7d89352c28d87f860ed9588c1e31289c819487037501eac0c92c54 | Java | 3,241 | 110 | /*
* IJ BAR: https://github.com/tferr/Scripts
*
* This program is free software; you can redistribute it and/or modify it under the terms of the
* GNU General Public License as published by the Free Software Foundation
* (http://www.gnu.org/licenses/gpl.txt).
* This program is distributed in the hope that it will... |
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