| | --- |
| | tags: |
| | - ANDDigest |
| | - ANDSystem |
| | - PubMed |
| | viewer: false |
| | extra_gated_fields: |
| | I agree to share my contact Information: checkbox |
| |
|
| | --- |
| | |
| | A PubMed-based dataset, used for the fine-tuning of the [BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext](https://arxiv.org/abs/2007.15779) model for the context-based classification of the names of molecular pathways. |
| | <br><br> |
| | HuggingFace [card](https://huggingface.co/Timofey/PubMedBERT_Pathways_Context_Classifier) of the fine-tuned model.<br> |
| | GitHub [link](https://github.com/ANDDigest/ANDDigest_classification_models) with a notebooks, for the fine-tuning and application of the model. |
| |
|
| | ## Citing |
| | If you found the developed datasets to be useful in your research, please cite the following articles: |
| |
|
| | ``` |
| | Ivanisenko, T.V., Saik, O.V., Demenkov, P.S. et al. ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature. BMC Bioinformatics 21 (Suppl 11), 228 (2020). https://doi.org/10.1186/s12859-020-03557-8 |
| | Ivanisenko, T.V.; Demenkov, P.S.; Kolchanov, N.A.; Ivanisenko, V.A. The New Version of the ANDDigest Tool with Improved AI-Based Short Names Recognition. Int. J. Mol. Sci. 2022, 23, 14934. https://doi.org/10.3390/ijms232314934 |
| | ``` |
