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The dataset generation failed
Error code: DatasetGenerationError
Exception: ArrowInvalid
Message: Failed to parse string: 'unknown' as a scalar of type int64
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1848, in _prepare_split_single
writer.write_table(table)
~~~~~~~~~~~~~~~~~~^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 784, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 795, in _write_table
pa_table = table_cast(pa_table, self._schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2378, in table_cast
return cast_table_to_schema(table, schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2312, in cast_table_to_schema
cast_array_to_feature(
~~~~~~~~~~~~~~~~~~~~~^
table[name] if name in table_column_names else pa.array([None] * len(table), type=schema.field(name).type),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
feature,
^^^^^^^^
)
^
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 1861, in wrapper
return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
~~~~^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2152, in cast_array_to_feature
return array_cast(
array,
...<2 lines>...
allow_decimal_to_str=allow_decimal_to_str,
)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 1863, in wrapper
return func(array, *args, **kwargs)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2015, in array_cast
return array.cast(pa_type)
~~~~~~~~~~^^^^^^^^^
File "pyarrow/array.pxi", line 1186, in pyarrow.lib.Array.cast
File "/usr/local/lib/python3.14/site-packages/pyarrow/compute.py", line 414, in cast
return call_function("cast", [arr], options, memory_pool)
File "pyarrow/_compute.pyx", line 604, in pyarrow._compute.call_function
File "pyarrow/_compute.pyx", line 399, in pyarrow._compute.Function.call
result = GetResultValue(
File "pyarrow/error.pxi", line 155, in pyarrow.lib.pyarrow_internal_check_status
File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
raise convert_status(status)
pyarrow.lib.ArrowInvalid: Failed to parse string: 'unknown' as a scalar of type int64
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1694, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1879, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
run_accession string | conf_run_accession int64 | study_accession string | conf_study_accession int64 | instrument_platform string | conf_instrument_platform int64 | library_selection string | conf_library_selection int64 | library_strategy string | conf_library_strategy int64 | base_count int64 | conf_base_count int64 | sequencing_source string | conf_sequencing_source int64 | biopsy_site string | conf_biopsy_site int64 | bs_uberon_code string | conf_bs_uberon_code int64 | biopsy_type string | conf_biopsy_type int64 | cell_line string | conf_cell_line int64 | cell_type string | conf_cell_type int64 | cl_code string | conf_cl_code int64 | organ string | conf_organ int64 | organ_uberon_code string | conf_organ_uberon_code int64 | disease string | conf_disease int64 | do_code string | conf_do_code int64 | is_cancer string | conf_is_cancer int64 | treatment string | conf_treatment int64 | treatment_time string | conf_treatment_time int64 | response string | conf_response int64 | age string | conf_age int64 | sex string | conf_sex int64 | ethnicity string | conf_ethnicity int64 | row_confidence_1_5 int64 | confidence_reasons null |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SRR628241 | 5 | PRJNA182514 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 3,355,487,150 | 5 | single_cell_unknown | 5 | platelets | 5 | unknown | 5 | blood | 5 | primary tissue | 5 | platelet | 5 | CL:0000233 | 5 | platelets | 5 | unknown | 5 | healthy | 5 | unknown | 5 | false | 5 | depleted | 5 | not applicable | 5 | stable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR452343 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,603,723,000 | 5 | bulk | 5 | intestine | 5 | UBERON:0000160 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | intestine | 5 | UBERON:0000160 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 61Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR094660 | 5 | PRJNA136721 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 930,922,965 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | unknown | 5 | endothelial cell of umbilical vein | 5 | CL:0002618 | 5 | blood vessel | 5 | UBERON:0001981 | 5 | unknown | 5 | unknown | 5 | false | 5 | normoxia | 5 | 24 hours | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR413913 | 5 | PRJNA151813 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,044,260,350 | 5 | bulk | 5 | fetal kidney | 5 | UBERON:0002113 | 5 | primary | 5 | HEK293 | 5 | hek293 cells | 5 | unknown | 5 | kidney | 5 | UBERON:0002113 | 5 | unknown | 5 | unknown | 5 | false | 5 | transrl-sv40 | 5 | not applicable | 5 | unknown | 5 | fetus | 5 | female | 5 | unknown | 5 | 5 | null |
SRR452379 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 756,569,380 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 32Y | 5 | female | 5 | asian | 5 | 5 | null |
SRR139219 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 312,377,300 | 5 | bulk | 5 | thymus | 2 | UBERON:0002370 | 5 | primary | 2 | unknown | 5 | unknown | 5 | unknown | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR094663 | 5 | PRJNA136721 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 994,812,630 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | unknown | 5 | endothelial cell of umbilical vein | 5 | CL:0002618 | 5 | blood vessel | 5 | UBERON:0001981 | 5 | unknown | 5 | unknown | 5 | false | 5 | hypoxia | 5 | 24 hours | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR413914 | 5 | PRJNA151813 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 840,271,100 | 5 | bulk | 5 | fetal kidney | 5 | UBERON:0002113 | 5 | primary | 5 | HEK293 | 5 | hek293 cells | 5 | unknown | 5 | kidney | 5 | UBERON:0002113 | 5 | unknown | 5 | unknown | 5 | false | 5 | transiently transfected plasmids | 5 | not applicable | 5 | unknown | 5 | fetus | 5 | female | 5 | unknown | 5 | 5 | null |
SRR413917 | 5 | PRJNA151813 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,002,694,750 | 5 | bulk | 5 | fetal kidney | 5 | UBERON:0002113 | 5 | primary | 5 | HEK293 | 5 | hek293 cells | 5 | unknown | 5 | kidney | 5 | UBERON:0002113 | 5 | unknown | 5 | unknown | 5 | false | 5 | transiently transfected plasmids | 5 | not applicable | 5 | unknown | 5 | fetus | 5 | female | 5 | unknown | 5 | 5 | null |
SRR452376 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 1,370,985,700 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 60Y | 5 | female | 5 | asian | 5 | 5 | null |
SRR568013 | 5 | PRJNA175123 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 775,479,433 | 5 | bulk | 5 | uterus, cervix | 3 | UBERON:0000002 | 5 | primary | 5 | HeLa S3 | 5 | unknown | 5 | unknown | 5 | unknown | 3 | unknown | 5 | obsolete human papilloma virus related cervical squamous cell carcinoma | 5 | DOID:7834 | 5 | false | 5 | cstf64 rnai | 5 | not applicable | 5 | stable | 5 | 30y6m | 5 | female | 5 | african american | 5 | 3 | null |
SRR424672 | 5 | PRJNA153117 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,256,562,300 | 5 | bulk | 5 | brain | 5 | UBERON:0000955 | 5 | primary | 5 | unknown | 5 | mixture of brain liver and muscle rna respectively | 5 | unknown | 5 | brain | 5 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | spike-in standards | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
ERR173270 | 5 | PRJEB3293 | 5 | ABI_SOLID | 5 | polyA | 5 | rna-seq | 5 | 2,265,066,150 | 5 | bulk | 5 | pancreas | 2 | UBERON:0001264 | 5 | primary | 2 | primary tissue | 5 | type B pancreatic cell | 5 | CL:0000169 | 5 | brain | 2 | UBERON:0000955 | 5 | brain ischemia | 5 | DOID:2316 | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 31Y | 5 | male | 5 | unknown | 5 | 2 | null |
SRR543504 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 1,858,493,937 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating tumor cell ctc | 5 | unknown | 5 | blood | 5 | UBERON:0000178 | 5 | healthy | 1 | unknown | 5 | true | 1 | epcam | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 1 | null |
SRR452380 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 1,304,852,885 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 66Y | 5 | female | 5 | asian | 5 | 5 | null |
SRR139172 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 746,202,205 | 5 | bulk | 5 | kidney | 2 | UBERON:0002113 | 5 | primary | 2 | unknown | 5 | kidney cell | 5 | CL:1000497 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR543507 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 2,217,846,734 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | healthy | 1 | unknown | 5 | true | 1 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 1 | null |
SRR452345 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,735,279,900 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 69Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR139178 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 651,143,780 | 5 | bulk | 5 | brain | 5 | UBERON:0000955 | 5 | primary | 5 | unknown | 5 | hepatocyte | 5 | CL:0000182 | 5 | brain | 5 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 3 | null |
SRR452382 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 1,209,172,020 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 66Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR424674 | 5 | PRJNA153117 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,215,678,550 | 5 | bulk | 5 | brain | 5 | UBERON:0000955 | 5 | primary | 5 | unknown | 5 | mixture of brain liver and muscle rna respectively | 5 | unknown | 5 | brain | 5 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | spike-in standards | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR442074 | 5 | PRJNA153307 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 987,642,550 | 5 | bulk | 5 | colon | 5 | UBERON:0001155 | 5 | primary | 5 | LS174T | 5 | epithelial cell of large intestine | 5 | CL:0002253 | 5 | colon | 5 | UBERON:0001155 | 5 | colon adenocarcinoma | 2 | DOID:162 | 2 | true | 5 | wnt | 5 | 72 hours | 5 | unknown | 5 | 58Y | 5 | female | 5 | caucasian | 5 | 2 | null |
SRR139176 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 287,340,375 | 5 | bulk | 5 | kidney | 2 | UBERON:0002113 | 5 | primary | 2 | unknown | 5 | kidney cell | 5 | CL:1000497 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR452383 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 675,559,430 | 5 | bulk | 5 | intestine | 5 | UBERON:0000160 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | intestine | 5 | UBERON:0000160 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 47Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR442077 | 5 | PRJNA153307 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,501,924,250 | 5 | bulk | 5 | colon | 5 | UBERON:0001155 | 5 | primary | 5 | LS174T | 5 | epithelial cell of large intestine | 5 | CL:0002253 | 5 | colon | 5 | UBERON:0001155 | 5 | colon adenocarcinoma | 2 | DOID:162 | 2 | true | 5 | wnt | 5 | 72 hours | 5 | unknown | 5 | 58Y | 5 | female | 5 | caucasian | 5 | 2 | null |
SRR452337 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 4,794,962,150 | 5 | bulk | 5 | intestine | 5 | UBERON:0000160 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | intestine | 5 | UBERON:0000160 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 63Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR452384 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 1,261,099,070 | 5 | bulk | 5 | intestine | 5 | UBERON:0000160 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | intestine | 5 | UBERON:0000160 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 61Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR452348 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,232,056,600 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 60Y | 5 | female | 5 | asian | 5 | 5 | null |
SRR452338 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,534,642,950 | 5 | bulk | 5 | intestine | 5 | UBERON:0000160 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | intestine | 5 | UBERON:0000160 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 58Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR452387 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 689,857,910 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 72Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR543502 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 1,499,371,724 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating tumor cell ctc | 5 | unknown | 5 | blood | 5 | UBERON:0000178 | 5 | healthy | 1 | unknown | 5 | true | 1 | epcam | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 1 | null |
SRR452340 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 4,085,511,600 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 64Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR543510 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 3,457,673,004 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | epcam ctc-chip | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR452341 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 2,835,505,150 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 76Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR387796 | 5 | unknown | 3 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,986,312,150 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | ADSC_1 | 5 | white adipocyte | 5 | CL:0000448 | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 3 | null |
SRR139177 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 781,380,740 | 5 | bulk | 5 | brain | 5 | UBERON:0000955 | 5 | primary | 5 | unknown | 5 | hepatocyte | 5 | CL:0000182 | 5 | brain | 5 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 3 | null |
SRR452344 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,169,469,050 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 69Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR452352 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 4,566,613,350 | 5 | bulk | 5 | intestine | 5 | UBERON:0000160 | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | intestine | 5 | UBERON:0000160 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 73Y | 5 | female | 5 | asian | 5 | 5 | null |
SRR452386 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 6,385,228,605 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 55Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR139179 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 779,188,970 | 5 | bulk | 5 | brain | 5 | UBERON:0000955 | 5 | primary | 5 | unknown | 5 | hepatocyte | 5 | CL:0000182 | 5 | brain | 5 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 3 | null |
SRR543505 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 1,617,402,329 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | healthy | 1 | unknown | 5 | true | 1 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 1 | null |
SRR543511 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 4,430,023,001 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR452351 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,440,238,000 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 32Y | 5 | female | 5 | asian | 5 | 5 | null |
SRR139186 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 808,470,425 | 5 | bulk | 5 | lung | 2 | UBERON:0002048 | 5 | primary | 2 | unknown | 5 | epithelial cell of lung | 5 | CL:0000082 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR390490 | 5 | PRJNA30709 | 5 | ABI_SOLID | 5 | polyA | 5 | rna-seq | 5 | 808,078,890 | 5 | bulk | 5 | fetal lung | 2 | UBERON:0005597 | 5 | primary | 2 | AG04450 | 5 | fibroblast of lung | 5 | CL:0002553 | 5 | prostate gland | 2 | UBERON:0002367 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 12fw | 3 | male | 5 | unknown | 5 | 2 | null |
SRR452353 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,183,598,750 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 66Y | 5 | female | 5 | asian | 5 | 5 | null |
SRR452356 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 2,782,867,250 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 66Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR452354 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,689,991,450 | 5 | bulk | 5 | intestine | 5 | UBERON:0000160 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | intestine | 5 | UBERON:0000160 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 66Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR543512 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 3,641,794,955 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | epcam ctc-chip | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR543513 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 3,782,459,554 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR452355 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,183,207,600 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 64Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR139183 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 722,539,090 | 5 | bulk | 5 | lung | 2 | UBERON:0002048 | 5 | primary | 2 | unknown | 5 | epithelial cell of lung | 5 | CL:0000082 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR139188 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 1,418,136,510 | 5 | bulk | 5 | lung | 2 | UBERON:0002048 | 5 | primary | 2 | unknown | 5 | epithelial cell of lung | 5 | CL:0000082 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR452357 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 4,192,485,350 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 52Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR543506 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 1,475,372,682 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating tumor cell ctc | 5 | unknown | 5 | blood | 5 | UBERON:0000178 | 5 | healthy | 1 | unknown | 5 | true | 1 | epcam ctc-chip | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 1 | null |
SRR543515 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 2,400,925,856 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR543525 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 3,226,785,829 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR452358 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,131,985,900 | 5 | bulk | 5 | intestine | 5 | UBERON:0000160 | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | intestine | 5 | UBERON:0000160 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 47Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR139199 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 464,758,280 | 5 | bulk | 5 | placenta | 2 | UBERON:0001987 | 5 | primary | 2 | unknown | 5 | placental pericyte | 5 | CL:2000078 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | placenta | 3 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR543508 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 1,730,813,392 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating tumor cell ctc | 5 | unknown | 5 | blood | 5 | UBERON:0000178 | 5 | healthy | 1 | unknown | 5 | true | 1 | epcam | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 1 | null |
SRR452378 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 1,536,327,695 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 52Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR413912 | 5 | PRJNA151813 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,001,399,350 | 5 | bulk | 5 | fetal kidney | 5 | UBERON:0002113 | 5 | primary | 5 | HEK293 | 5 | hek293 cells | 5 | unknown | 5 | kidney | 5 | UBERON:0002113 | 5 | unknown | 5 | unknown | 5 | false | 5 | transiently transfected phrl-sv40 | 5 | not applicable | 5 | unknown | 5 | fetus | 5 | female | 5 | unknown | 5 | 5 | null |
SRR413919 | 5 | PRJNA151813 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,036,812,450 | 5 | bulk | 5 | fetal kidney | 5 | UBERON:0002113 | 5 | primary | 5 | HEK293 | 5 | hek293 cells | 5 | unknown | 5 | kidney | 5 | UBERON:0002113 | 5 | unknown | 5 | unknown | 5 | false | 5 | transiently transfected plasmids | 5 | not applicable | 5 | unknown | 5 | fetus | 5 | female | 5 | unknown | 5 | 5 | null |
SRR442080 | 5 | PRJNA153307 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,455,115,600 | 5 | bulk | 5 | colon | 5 | UBERON:0001155 | 5 | primary | 5 | LS174T | 5 | epithelial cell of large intestine | 5 | CL:0002253 | 5 | colon | 5 | UBERON:0001155 | 5 | colon adenocarcinoma | 2 | DOID:162 | 2 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 58Y | 5 | female | 5 | caucasian | 5 | 2 | null |
SRR139170 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 378,144,875 | 5 | bulk | 5 | heart | 2 | UBERON:0000948 | 5 | primary | 2 | unknown | 5 | heart | 5 | unknown | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR452362 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 4,463,826,000 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 72Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR139191 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 574,186,830 | 5 | bulk | 5 | ovary | 2 | UBERON:0000992 | 5 | primary | 2 | unknown | 5 | oocyte | 5 | CL:0000023 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR442083 | 5 | PRJNA153307 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,125,558,900 | 5 | bulk | 5 | colon | 5 | UBERON:0001155 | 5 | primary | 5 | LS174T | 5 | epithelial cell of large intestine | 5 | CL:0002253 | 5 | colon | 5 | UBERON:0001155 | 5 | colon adenocarcinoma | 2 | DOID:162 | 2 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 58Y | 5 | female | 5 | caucasian | 5 | 2 | null |
SRR543530 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 2,773,760,321 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | epcam ctc-chip | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR139202 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 686,999,985 | 5 | bulk | 5 | spleen | 2 | UBERON:0002106 | 5 | primary | 2 | unknown | 5 | blood cell | 5 | CL:0000081 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR543531 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 2,500,612,350 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR543532 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 1,026,591,509 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | epcam ctc-chip | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR139203 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 682,901,940 | 5 | bulk | 5 | spleen | 2 | UBERON:0002106 | 5 | primary | 2 | unknown | 5 | blood cell | 5 | CL:0000081 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR442086 | 5 | PRJNA153307 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 1,954,496,150 | 5 | bulk | 5 | colon | 5 | UBERON:0001155 | 5 | primary | 5 | LS174T | 5 | epithelial cell of large intestine | 5 | CL:0002253 | 5 | colon | 5 | UBERON:0001155 | 5 | colon adenocarcinoma | 2 | DOID:162 | 2 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 58Y | 5 | female | 5 | caucasian | 5 | 2 | null |
SRR442088 | 5 | PRJNA153307 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 502,366,700 | 5 | bulk | 5 | colon | 5 | UBERON:0001155 | 5 | primary | 5 | LS174T | 5 | epithelial cell of large intestine | 5 | CL:0002253 | 5 | colon | 5 | UBERON:0001155 | 5 | colon adenocarcinoma | 2 | DOID:162 | 2 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 58Y | 5 | female | 5 | caucasian | 5 | 2 | null |
SRR139207 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 330,195,675 | 5 | bulk | 5 | spleen | 2 | UBERON:0002106 | 5 | primary | 2 | unknown | 5 | blood cell | 5 | CL:0000081 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
ERR173257 | 5 | PRJEB3293 | 5 | ABI_SOLID | 5 | polyA | 5 | rna-seq | 5 | 3,714,050,450 | 5 | bulk | 5 | pancreas | 2 | UBERON:0001264 | 5 | primary | 2 | primary tissue | 5 | type B pancreatic cell | 5 | CL:0000169 | 5 | brain | 2 | UBERON:0000955 | 5 | traumatic brain injury | 5 | DOID:0081292 | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 70Y | 5 | male | 5 | unknown | 5 | 2 | null |
SRR543533 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 1,286,148,860 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
ERR173264 | 5 | PRJEB3293 | 5 | ABI_SOLID | 5 | polyA | 5 | rna-seq | 5 | 2,544,934,250 | 5 | bulk | 5 | pancreas | 2 | UBERON:0001264 | 5 | primary | 2 | primary tissue | 5 | type B pancreatic cell | 5 | CL:0000169 | 5 | brain | 2 | UBERON:0000955 | 5 | traumatic brain injury | 5 | DOID:0081292 | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 62Y | 5 | male | 5 | unknown | 5 | 2 | null |
SRR139164 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 729,939,000 | 5 | bulk | 5 | heart | 2 | UBERON:0000948 | 5 | primary | 2 | unknown | 5 | heart | 5 | unknown | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR139173 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 910,490,245 | 5 | bulk | 5 | kidney | 2 | UBERON:0002113 | 5 | primary | 2 | unknown | 5 | kidney cell | 5 | CL:1000497 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR452388 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 856,365,860 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | male | 5 | asian | 5 | 5 | null |
SRR139165 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 602,287,490 | 5 | bulk | 5 | heart | 2 | UBERON:0000948 | 5 | primary | 2 | unknown | 5 | heart | 5 | unknown | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR452364 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 3,693,015,650 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | unknown | 5 | unknown | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | male | 5 | asian | 5 | 5 | null |
SRR139174 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 739,983,230 | 5 | bulk | 5 | kidney | 2 | UBERON:0002113 | 5 | primary | 2 | unknown | 5 | kidney cell | 5 | CL:1000497 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR543509 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 2,663,228,671 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | healthy | 1 | unknown | 5 | true | 1 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 1 | null |
SRR543514 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 2,334,522,288 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | epcam ctc-chip | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR139171 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 929,934,985 | 5 | bulk | 5 | kidney | 2 | UBERON:0002113 | 5 | primary | 2 | unknown | 5 | kidney cell | 5 | CL:1000497 | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR627520 | 5 | PRJNA182514 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 2,273,854,150 | 5 | single_cell_unknown | 5 | platelets | 5 | unknown | 5 | blood | 5 | primary tissue | 5 | platelet | 5 | CL:0000233 | 5 | platelets | 5 | unknown | 5 | healthy | 5 | unknown | 5 | false | 5 | depleted | 5 | not applicable | 5 | stable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR452365 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 1,932,778,575 | 5 | bulk | 5 | unknown | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 83Y | 5 | male | 5 | asian | 5 | 5 | null |
SRR139166 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 742,374,465 | 5 | bulk | 5 | heart | 2 | UBERON:0000948 | 5 | primary | 2 | unknown | 5 | heart | 5 | unknown | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR628222 | 5 | PRJNA182514 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 7,379,362,150 | 5 | single_cell_unknown | 5 | platelets | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | platelet | 5 | CL:0000233 | 5 | platelets | 5 | unknown | 5 | healthy | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR452368 | 5 | PRJNA157511 | 5 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 1,149,476,300 | 5 | bulk | 5 | stomach | 5 | UBERON:0000945 | 5 | primary | 5 | primary tissue | 5 | type A cell of stomach | 5 | CL:0002264 | 5 | stomach | 5 | UBERON:0000945 | 5 | stomach cancer | 5 | DOID:10534 | 5 | true | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | 70Y | 5 | female | 5 | asian | 5 | 5 | null |
SRR543517 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 2,586,868,861 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR139167 | 5 | unknown | 3 | ABI_SOLID | 5 | small RNA | 5 | rna-seq | 5 | 603,391,180 | 5 | bulk | 5 | heart | 2 | UBERON:0000948 | 5 | primary | 2 | unknown | 5 | heart | 5 | unknown | 5 | brain | 2 | UBERON:0000955 | 5 | unknown | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 2 | null |
SRR543519 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 2,263,997,610 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | igg | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR628234 | 5 | PRJNA182514 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 4,926,355,900 | 5 | single_cell_unknown | 5 | platelets | 5 | unknown | 5 | blood | 5 | primary tissue | 5 | platelet | 5 | CL:0000233 | 5 | platelets | 5 | unknown | 5 | healthy | 5 | unknown | 5 | false | 5 | depleted | 5 | not applicable | 5 | stable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR543524 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 4,237,950,903 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | epcam ctc-chip | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR628235 | 5 | PRJNA182514 | 5 | ABI_SOLID | 5 | other | 5 | rna-seq | 5 | 2,083,033,700 | 5 | single_cell_unknown | 5 | platelets | 5 | unknown | 5 | primary | 5 | primary tissue | 5 | platelet | 5 | CL:0000233 | 5 | platelets | 5 | unknown | 5 | healthy | 5 | unknown | 5 | false | 5 | unknown | 5 | not applicable | 5 | no treatment | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
SRR543526 | 5 | PRJNA173018 | 5 | HELICOS | 5 | other | 5 | rna-seq | 5 | 3,562,481,738 | 5 | bulk | 5 | blood | 5 | UBERON:0000178 | 5 | metastasis | 5 | unknown | 5 | circulating cell | 5 | CL:0000080 | 5 | blood | 5 | UBERON:0000178 | 5 | pancreatic cancer | 5 | DOID:1793 | 5 | true | 5 | epcam ctc-chip | 5 | not applicable | 5 | unknown | 5 | unknown | 5 | unknown | 5 | unknown | 5 | 5 | null |
End of preview.
1M RNAseq SRA samples annotations
- 800k_completed_metadata.csv: main metadata table for approximately 800k annotated RNA-seq/SRA samples.
- 800k_rnaseq_metappuccino_labels.db: SQLite database containing Metappuccino labels and associated structured metadata.
- manual_dics/: folder containing manual normalization and cross-column remapping dictionaries.
- FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv: maps raw biopsy_site values to normalized UBERON anatomical terms.
- FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv: maps raw organ values to normalized UBERON anatomical terms.
- FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv: maps raw disease values to normalized DOT/DOID disease terms.
- global_all_column_remaps_WITH_ONTOLOGY_MAPPING_VALUE_ONLY.tsv: defines cross-column remapping rules for values found in the wrong metadata field.
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