marin-dna/chinchilla-m5.1-predictive-logo-pilot

MarinDNA m5.1 chinchilla predictive sequence logo

This dataset contains canonical A/C/G/T log-probability and derived glyph-height BigWigs from the MarinDNA m5.1 two-pass predictive sequence-logo approximation on the UCSC/NCBI RefSeq chinchilla assembly GCF_000276665.1. It was produced with marin-dna/marin-dna-exp135-m5.1 at immutable revision c0676b2012b8b9c526deb26ff517f6b92b6d375d by the commit-pinned chinchilla-logo pipeline.

This is a predictive next-token logo, not an LLR, mutation-effect, or constraint track. Each scored window uses exactly two logical sequences: the forward reference and its reverse complement.

Scope

This pilot release scores only the following configured scaffold(s):

• NW_004955402.1

It is not a genome-wide chinchilla release. Positions outside the listed scaffold(s), assembly gaps, non-A/C/G/T bases, and canonical-run borders without full model context are absent rather than encoded as zero.

Files

• bigwig/logprob/{A,C,G,T}.bw: canonical log-probabilities after averaging forward and aligned reverse-complement logits.
• bigwig/logo/{A,C,G,T}.bw: information-content glyph heights in bits.
• ucsc/hub.txt: UCSC track-hub entry point.
• manifest/release.json: immutable model/code/assembly identities, coverage, runtime, and file checksums.