sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
7312f43d631ed4c1614245ae4adbd11e21076a74033ca497dfa9ca76183df976 | C | 2,056 | 82 | /* PANDAseq -- Assemble paired FASTQ Illumina reads and strip the region between amplification primers.
Copyright (C) 2011-2012 Andre Masella
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Fou... |
a5a1b80bbd5b5fa4df43491221898bd4c9ef932274af0aefc5e9783a6cfa5250 | C | 2,058 | 71 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) YEAR OpenFOAM Foundation
\\/ ... |
1cc292ab3c0f6c8e73faf80e5e91b320d39dd66528dfaaa6f08cbe0e2363e312 | C | 2,059 | 56 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
404e89537ff288079170e4c208032656721a42cacdd89a2112a5b0f11d7252a7 | C | 2,060 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
c12419bb82f3d0fd7bf9e673d0db56a2b4978c4c6928d20eba3b42e48bbe56c3 | C | 2,060 | 65 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
50f4d7da95369c75fdfd97b3732cc8b7de1b2fe9ba926c108b6bfd64e005be17 | C | 2,061 | 84 | /* edwBamRemoveChrom - Remove a chromosome from BAM file.. */
/* Copyright (C) 2014 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "bamFile.h"
vo... |
a86c601f5334241f58a5c779aa3877245e8b01fb5e51bb10825ba3a7e96721da | C | 2,062 | 54 | /*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include "tpcextensions.h"
#include "test_tpcimage.h"
/*************************************************************************... |
9187d228aff948efbdda3fe780ff704f8e62e5fbac207ca61571ce69eaefc516 | C | 2,063 | 75 | /*
* Copyright (c) by Peter De Rijk (VIB - University of Antwerp)
* See the file "license.txt" for information on usage and redistribution of
* this file, and for a DISCLAIMER OF ALL WARRANTIES.
*/
#define _FILE_OFFSET_BITS 64
#define _GNU_SOURCE
#include "cg.h"
#include <stdio.h>
#include <stdlib.h>
#include <st... |
433dad3fb658b91256ae24bc1438f12f584c3112012c8e79cea76e06c503e422 | C | 2,069 | 84 | /* liftPromoHits - Lift motif hits from promoter to chromosome coordinates. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "dnautil.h"
void usage()
/* Explain usage and exit. */
{
errAbort(
"liftPromoHits - Lift motif hits from promoter to chromosome coordinates\n"
"u... |
11b3865cb1c5f7c011d489c26e3d5aa7baca6f823b2d2d4a55d2a307e1198341 | C | 2,073 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2019 OpenFOAM Foundation
\\... |
3fea28fca236b4ee94d47634326e6989e5b13f2af9d6b055a9a6dd93068bec8f | C | 2,075 | 80 | /* agpCloneCheck - Check that have all clones in an agp file (and the right version too). */
/* Copyright (C) 2011 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "chea... |
e8ec1d45b9a804dd68a504f55128314253bdb3e04cdbf0f956a29ef57a86a227 | C | 2,083 | 66 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2017-2018 OpenFOAM Foundation
\\... |
e0975a1bf6c7ce2f550fa11d4f317d72a79defa6bbe350a31ca4be7f41cc3f52 | C | 2,087 | 71 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
64feb79a67f5bdcdfbf9339809e420aa1ec939765e43ca3d77def7f827de6c08 | C | 2,088 | 63 | /*
THIS FILE IS PART OF MUMPS VERSION 4.6.2
This Version was built on Fri Apr 14 14:59:20 2006
This version of MUMPS is provided to you free of charge. It is public
domain, based on public domain software developed during the Esprit IV
European project PARASOL (1996-1999) by CERFACS, ENSEEIHT-IRIT and RA... |
a2e2425cdd15c1d0b64d43cd3309b58895d19436fa40d405f60ea93d932acacb | C | 2,088 | 61 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2018 OpenFOAM Foundation
\\/ ... |
52babd9aa58755239a61f0e6d6712fb1ffb13fe8d94e8a9195b78d9b531b2608 | C | 2,089 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2019 OpenFOAM Foundation
\\... |
121daed964c5b9c49391d122ef39005f023a92f908a3d730b66b7001861d3be7 | C | 2,090 | 83 | /* cdwFastqPolyFilter - Filter out runs of poly-A from a fastq file.. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "fq.h"
int minSize = 4; // minimum size of read to leave
int minTrim = 16; // demand at least this many in a row to trim
void usage()
/* Explain usage and... |
20ae406686b584fdd86c3e5f21c6ca4434a22a2ef09eb538ad3d0d0837cd96cb | C | 2,098 | 64 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
48490b0725d348eecbb786a296833523d81272c8c94d6ec5d95d8e2fc8120576 | C | 2,098 | 61 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2018 OpenFOAM Foundation
\\... |
1fb2ec5dcbe8af949a6314e24d3e9d20a07974ac571a908196d7ad99918c3c2b | C | 2,099 | 70 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
a0e27eefdd31ea6af8baaeb6f80f95248c75b55d46c8e6b0f3131b117a27890b | C | 2,101 | 75 | /* eapFreen - Little program to help test things and figure them out. It has no permanent one fixed purpose.. */
/* Copyright (C) 2014 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "... |
08cbc986878537cd38dbe02c0490d41a4032767eb555fc06a02d611939ef3202 | C | 2,106 | 48 | #include "cs.h"
/* sparse Cholesky update/downdate, L*L' + sigma*w*w' (sigma = +1 or -1) */
CS_INT cs_updown (cs *L, CS_INT sigma, const cs *C, const CS_INT *parent)
{
CS_INT n, p, f, j, *Lp, *Li, *Cp, *Ci ;
CS_ENTRY *Lx, *Cx, alpha, gamma, w1, w2, *w ;
double beta = 1, beta2 = 1, delta ;
#ifdef CS_COMPLEX
... |
c937bd94bfc0f7998b3bc7abdacee0843c725b7f19f8c78516435c5f1d8e3e64 | C | 2,106 | 76 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
a1bbd7f4667adbeab19c77b609bf6d627990b94ba3920f4cd43d48aa320fadf5 | C | 2,112 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2019 OpenFOAM Foundation
\\... |
af377112d2cc5ae22eeb4fac5ba14db11ab7fbe9f3c397a98b20ec7d4bf1a069 | C | 2,112 | 60 | /* ========================================================================== */
/* === KLU_defaults ========================================================= */
/* ========================================================================== */
/* Sets default parameters for KLU */
#include "klu_internal.h"
Int KLU_de... |
0293a1c0aff335b126ec7aa5c114f445ea1a9fe80835df8588d1055ab3477e8b | C | 2,118 | 69 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2013-2018 OpenFOAM Foundation
\\... |
6c9958b4c1fac922afb53140bfd99cd1853fe35a0248c8c8ebea1d51f064c16f | C | 2,120 | 87 | /* sangInsert.c was originally generated by the autoSql program, which also
* generated sangInsert.h and sangInsert.sql. This module links the database and the RAM
* representation of objects. */
#include "common.h"
#include "jksql.h"
#include "sangInsert.h"
void sangInsertStaticLoad(char **row, struct sangInse... |
ab0fb379d6929350acbe9e5047a9021cb254c77e8f249f236f90ce908015d850 | C | 2,121 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2019 OpenFOAM Foundation
\\... |
18041f5c43ec2c7a67c73ce1c162232f2c2a399aa814b93ce6b79568f5181f0e | C | 2,124 | 83 | /* refCount - stuff to manipulate object reference counts.
* We have to use a little inline assembler to get these to
* happen in a thread-safe manner. */
#include "common.h"
#include "pfCompile.h"
#include "cCoder.h"
#include "refCount.h"
#if defined(PARALLEL)
void codeVarIncRef(FILE *f, char *varName)
/* Bump re... |
2266f310963305a57c5c65e5193b38e039cd9d8babf2c2d5db18c2209af8957c | C | 2,124 | 76 | /* edwFixBzip - Help change bzipped file to gzipped files.. */
/* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "md5.h"
#inclu... |
d157140bd4cf774cdda9d31c5626c4f57102956867961ee79425d00e2a5a56f1 | C | 2,125 | 79 | /* hgs - redirects to a session. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "jksql.h"
#include "htmshell.h"
#include "web.h"
#include "cheapcgi.h"
#include "cart.h"
#include "hui.h"
#include "udc.h"
#include "knetUdc.h"
#include "genbank.h"
#include "hdb.h"
/* Global V... |
72e7e8afb8745066239158ffae7a17da4a8fc25abb0f5b1a47efda70bd4c0c69 | C | 2,132 | 80 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
d953308783e01b367a869984b9f6c76eef2b90b40a8c494090eddb1d0a06b92f | C | 2,133 | 76 | /* phyloPlace: place SARS-CoV-2 sequences in phylogenetic tree using add_missing_samples program. */
/* Copyright (C) 2020-2024 The Regents of the University of California */
#include "common.h"
#include "cart.h"
#include "hdb.h"
#include "knetUdc.h"
#include "linefile.h"
#include "options.h"
#include "trackHub.h"
#i... |
d4429d380140ef6b380328ebc8fcee15ed4296b8401754bfc25f581ac758b0e9 | C | 2,134 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
ce4a40d07b5e6f5a69ca66166d2ddf902f812aaa8aef490f5b295a351059f007 | C | 2,135 | 109 | #include<stdlib.h>
#include<string.h>
#include<pandaseq-plugin.h>
HELP("Filter out any sequences without a valid index tag.", "validtag:TAG1:TAG2:TAG3");
VER_INFO("1.0");
struct data {
char **tags;
char *tag_data;
int numtags;
int taglen;
};
static bool precheck_func(
PandaLogProxy logger,
const panda_seq_iden... |
a34afde715e278f9ec0ba7645bfdc90040906b6c5635ba43e7165b423689ac77 | C | 2,139 | 59 | #include "cs_mex.h"
/* cs_usolve: x=U\b. U must be sparse, real, and upper triangular. b must be a
* real full or sparse vector. x is full or sparse, depending on b.
*
* Time taken is O(flop count), which may be less than n if b is sparse,
* depending on U and b.
*
* This function works with MATLAB 7.2, but is... |
f5f95296bd5c2ce2a4deb4c2ad8f49ee16b930f9dfd06c9b39287597f1d3da11 | C | 2,139 | 59 | #include "cs_mex.h"
/* cs_lsolve: x=L\b. L must be sparse, real, and lower triangular. b must be a
* real full or sparse vector. x is full or sparse, depending on b.
*
* Time taken is O(flop count), which may be less than n if b is sparse,
* depending on L and b.
*
* This function works with MATLAB 7.2, but is... |
38af8954033ff1f25c17aec2dcfac1e0499d9dbc59a185df3babd2333515e101 | C | 2,140 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
c7f65e3e8019e666e35eeb0c8213593c792b98d7e8770a1b2886e21ecaafda06 | C | 2,143 | 65 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
57fea798ece7c1d3d78db30e16f5015b36fa8ff1f0703121c034f7057ff2ae3c | C | 2,146 | 73 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
93602a5148b40832d51cc2104f2830f6a388e27fff79cd1db46f501aeee7559e | C | 2,146 | 84 | #include "../verrou.h"
#include <stdio.h>
#include <math.h>
#include <stdbool.h>
#include <string.h>
float computeFloat () {
float res=0;
int i;
for(i=0; i< 1000; i++){
res+=(float)0.1;
}
return res-100 ;
}
double compute () {
double res=0;
int i;
for(i=0; i< 1000; i++){
res+=0.1;
}
retu... |
c71e61070299172c35e12ffbd3887f53d8415cfe2cc3a830ca23fc510da3f6e8 | C | 2,149 | 68 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
2507de87ea4d42e9980f0e7fa47c0a79c59c61730ae1bc12f6bddcab8d75e0ab | C | 2,153 | 58 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
961def86d78607e0d90b9c9ffa6938b70a15429145a1b723f86f4b0c4c11a0e0 | C | 2,156 | 66 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
611971f4c1ca55e6b11e214127bdf28ab6632a4f25907eca87ed36eab632b3d4 | C | 2,158 | 77 | /* cgiExample - An example cgi program that uses mySQL. */
/* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "cheapcgi.h"
#include "htmshell.h"
#include "jksql.h"
#include "knownInfo.h"
... |
be16732ce462f30c222ddd01f2e9aa2d13ad454dc44f7985f765ab1b708f9449 | C | 2,162 | 45 | #include "tcl.h"
#include "genomecomb.h"
#include <sys/types.h>
#include <time.h>
#include <math.h>
extern int genomecomb_tsv_select_ObjCmd _ANSI_ARGS_((ClientData clientData,
Tcl_Interp *interp, int argc, char *argv[]));
extern int genomecomb_tsv_select_indexed_ObjCmd _ANSI_ARGS_((ClientData clientData,
Tcl_Interp... |
bec45d56037c4e406f610ac04069fa01f9a4fd3673eec9f7bcb15a18f9303d87 | C | 2,163 | 58 | /** @file ranoise.c
* @brief PET noise estimation.
*/
/*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <... |
fae889d08f15b9b9c1042f87d016320a8ae12b2804b8c7e8f0f364b80aee2ac3 | C | 2,164 | 57 | /*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include "tpcextensions.h"
#include "tpctac.h"
#include "tpctacmod.h"
#include "test_tpcbfm.h"
/******************************... |
82a458d8c00a472f58529317944cfc94a8175669c6933d90b5606256aecf051e | C | 2,165 | 70 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
e67fde57bad81b18f79f3d7a14c712d93aad95f0aff3efd63cfc561314bc6c8c | C | 2,166 | 68 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
c63dea55126062328e60d7b77db55684ced57b37309fd2c4528cb511a8c4ff03 | C | 2,173 | 76 | /*
* Copyright (c) by Peter De Rijk (VIB - University of Antwerp)
* See the file "license.txt" for information on usage and redistribution of
* this file, and for a DISCLAIMER OF ALL WARRANTIES.
*/
#define _FILE_OFFSET_BITS 64
#define _GNU_SOURCE
#include "cg.h"
#include <stdio.h>
#include <stdint.h>
#include <st... |
702bc5af1b7b8b4bf4e5e9b9e3df73ceb9d41a1b5467e1b581ce12378022cd1c | C | 2,177 | 58 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2018 OpenFOAM Foundation
\\... |
844d6f7005e14e502a6522fdc90736f4f685fb0b04a586f4645b5f3cb3aa9269 | C | 2,178 | 106 | /*
*
* Copyright (C) 2006-2007, Robert Oostenveld
*
* This implements C = A / B for uint64 data types
* and either A and B have the same size or one of them is scalar.
*
* This function does not check the occurence of integer overflowing.
*
*/
#include "mex.h"
#include <math.h>
#if defined(_WIN32) || defined... |
d6fd17ebec669f359055b0f45933f9daadc02680e7f0b9770d48822dc248b735 | C | 2,178 | 76 | /* edwFixQualsAtPos - Fix bug from integer oveflow in edwFastqFile.qualsAtPos.. */
/* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#in... |
166cf299396c486371567532c7ec5bf281aa149a8b5d170507079da42059e267 | C | 2,179 | 70 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
e2fb5e950823466f8f3534fc618c8ae7df4b897d2235a73671d30b97fbdc10cc | C | 2,179 | 70 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2019 OpenFOAM Foundation
\\... |
12d0ce38e37d04b007e8b53aa50284581cae65969b1c8b6e777238d4a3011e27 | C | 2,180 | 58 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
1fdd5ae3a0994b66134c3800552bc59e2dc53d91e1e55e2ef519bd2cbc7072ac | C | 2,180 | 64 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
77fc31525ec01bc0211481daa287bbbc93b664e78348afdf1c9e57d6d698107b | C | 2,181 | 71 | /// @file lms.c
/// @author Kaisa Sederholm, Vesa Oikonen
/// @brief Least median of squares estimate for single data.
///
/*****************************************************************************/
#include "libtpcmodel.h"
/*****************************************************************************/
/* local fun... |
8537d103d7b07b558b1cf861f5b3012c4a06e75183b3f30f1725845c4a72be2f | C | 2,189 | 72 | #include <stdint.h>
#include <stdio.h>
#include <stdlib.h>
#include "interflop/common/float_const.h"
typedef union {
double f64;
int64_t s64;
} binary64;
typedef union {
float f32;
int32_t s32;
} binary32;
#define OPERATOR(a, b) \
switch (op) { ... |
af2f1f2eaafbf89924d69ba9d533044595e11df43a77c36c5bceedecc6d91870 | C | 2,190 | 82 | /* gpToGtf - Convert gp table to GTF. */
/* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "jksql.h"
#include "hdb.h"
#include ... |
9fd4468974c32ffa7dc05f2848bd00e14d89456911654208f26933f5e9f59e3d | C | 2,194 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
cebbb0f5cdc7b52df6ca384fb421851edbf8373eb2eb0abe602875c5801544dd | C | 2,195 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2012-2018 OpenFOAM Foundation
\\... |
dd883a90b2e8c48f84efb3548ee98f6ba952a1dfe14854e3ca0ba43acbde89a2 | C | 2,196 | 88 | /*
This file is part of Verrou, a FPU instrumentation tool.
Copyright (C) 2014-2021 EDF
B. Lathuilière <[email protected]>
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public License as
published by the Free Software Found... |
86a368e0902826ba71199b88800060b0e6f5566366651f1f846459b6d1bfeb70 | C | 2,197 | 58 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2018 OpenFOAM Foundation
\\... |
8c9771c3909a34890fd657df9648917b18ce37af5b29eb4543416b0fee52b48d | C | 2,198 | 58 | #include "cs_mex.h"
/* cs_chol: sparse Cholesky factorization */
void mexFunction (int nargout, mxArray *pargout [ ], int nargin,
const mxArray *pargin [ ])
{
CS_INT order, n, drop, *p ;
if (nargout > 2 || nargin < 1 || nargin > 2)
{
mexErrMsgTxt ("Usage: [L,p] = cs_chol(A,drop)") ;
}
dr... |
9815743e4161cb645512af71a4d896e7652d2e7410154a9b0f2a36d9bb51790c | C | 2,201 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
c760d7d8688473059600d9906fcbbf4d592d451ee9650d884aa7336eb286398a | C | 2,203 | 90 | /* sangRange.c was originally generated by the autoSql program, which also
* generated sangRange.h and sangRange.sql. This module links the database and the RAM
* representation of objects. */
#include "common.h"
#include "jksql.h"
#include "sangRange.h"
void sangRangeStaticLoad(char **row, struct sangRange *re... |
cc4c4aeefb67c7f5827c9e943bf031ed707d388f56f0e59da290662ea543360b | C | 2,203 | 69 | /* encodePatchTdb - Lay a trackDb.ra file from the pipeline gently on top of the trackDb system. */
/* Copyright (C) 2011 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#includ... |
0707dc604fd6993b0e049cccc0c2c10db67d23379a4d691f1b371fddcd3fb1ef | C | 2,204 | 66 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
0d84118e8c3ddfd4c3872378a1aecb9bd2fbc987543f261720467db159c9ae7f | C | 2,204 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
a069c69a08b391fac5ff6a0f1412c8d8d29171945c07117518c40b3729d8cfd1 | C | 2,204 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
a5d26dd7156f5ee6c85af4faecde651ce82ba0707483d8fcf897ad7d3bb7de1f | C | 2,204 | 66 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
b63f1edc7518052b6ee6c320219a9a363e3b86e458057bc50a0072c38998919c | C | 2,205 | 86 | /*
* $Id: zstream.c 7523 2019-02-01 11:31:08Z guillaume $
* Guillaume Flandin
*/
/* mex -O CFLAGS='$CFLAGS -std=c99' -largeArrayDims zstream.c */
/* setenv CFLAGS "`mkoctfile -p CFLAGS` -std=c99" */
/* mkoctfile --mex zstream.c */
/* miniz: https://github.com/richgel999/miniz */
#define MINIZ_NO_STDIO
#define MIN... |
a59af9f7d275084045c1c00e1f9542e2413608e6af11f362252b816c791f38fd | C | 2,206 | 50 | /* ========================================================================== */
/* === Demo/cholmod_simple ================================================== */
/* ========================================================================== */
/* -------------------------------------------------------------------------... |
ef21d92ff395dc989c432fc432e8565fdd3569b1adeca964e581744393fd173a | C | 2,206 | 74 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
c3f82819871ac921897b700eb24bb1b41a33800435b28a0791e931e8371c3080 | C | 2,207 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
032522412c67849aa85b767485ee718e911808cf3296248323a8b074795191da | C | 2,210 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
9d8f7409dc809b5e6b873ef5795016cb25de31b86aefbb0cf7db057e090446c9 | C | 2,212 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
bfa566c69d0119979ab6e5e63d15800d6ac407c281d15e5003c96ec9e1597efa | C | 2,213 | 61 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
443451796766424700cdfbbe06b5f75e11acd995ae31e384aaec56625b8f9e43 | C | 2,214 | 74 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2019 OpenFOAM Foundation
\\... |
89473c8dfcce2645aa2422a50aab8092988322a50b3cd0a8a46de41d08b31753 | C | 2,214 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
99c17e4baf14ad7e62a8e8a5ec003c894436e50052cfb2eb936e3002f5a4ec2f | C | 2,214 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
a97281eaa4746d55797a83f3b7719a4644261f494ac8dfd6e7e24e71008e00d5 | C | 2,214 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
8e9a8082983ec59e6431dfc81d88a94101fb98285a9a2e12c4c473f45a9a0c44 | C | 2,217 | 72 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2013-2018 OpenFOAM Foundation
\\... |
5fe4ed8b169df8292e8f7d8da9b53de75a7adba8793065f1ecb434de0c1a24dd | C | 2,219 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2018 OpenFOAM Foundation
\\/ ... |
64d7479585ae30f1cb60eb3ad5656cac31db7c69c53167bba42292eeb7cba441 | C | 2,222 | 71 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2017-2018 OpenFOAM Foundation
\\... |
8fbfacb57c924225165e190ca0dc618ba5bbf355cf9aba39c2488ce81778585e | C | 2,225 | 94 | /* checkQa - make sure that .fa and .qa files are in correspondence. */
#include "common.h"
#include "portable.h"
#include "linefile.h"
#include "qaSeq.h"
void usage()
/* Explain usage and exit. */
{
errAbort(
"checkQa - make sure that .fa and .qa files are in correspondence.\n"
"usage:\n"
" checkQa dirs qaDir... |
f930a91ab735f33ded28f9f8255aa16fe67109ae8f450b267094ce5460d40ea8 | C | 2,227 | 58 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2018 OpenFOAM Foundation
\\... |
d0b4192ae8db8631cf4061c5b8ab886ce26cf643b27adf94e2d102ebf0ebc1f1 | C | 2,237 | 58 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2018 OpenFOAM Foundation
\\... |
f556ed9272cbe2f0957bf4295b19388fba4858f78a8507148e23d762837b053b | C | 2,241 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
931b3ed85c024d08d52dda5af94a19ab66d53f970fa04d8bf339195928e06e9a | C | 2,244 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
9b0464068581200ea6e8bafeecc755f965245d4200f2feb11eea429977907060 | C | 2,248 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
245c091d71243c6c50e8243e7b715a09ab35aa0d089ae06737abc54e199a66db | C | 2,251 | 76 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
fb325c4b2150e9ec9a546f8b925cd279f0367199a153a5abbda5e9d9884a4367 | C | 2,251 | 62 | /*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include "tpcextensions.h"
#include "test_tpcfileutil.h"
/**********************************************************************... |
a69d5bf375c5cda970a8bf37b462663722422ee27dc86e7a459dab7476bec160 | C | 2,252 | 73 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
e543c288c99e11d4d6b34053bd590926d50d091c9e62d58662dabbf4b7f667fa | C | 2,253 | 79 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
d395cc3196e111655641567a8bbce735e828720f8e322a2c8204ae01fe2cfdd7 | C | 2,254 | 88 | /*
*
* Copyright (C) 2006-2007, Robert Oostenveld
*
* This implements C = A + B for uint64 data types
* and either A and B have the same size or one of them is scalar.
*
* This function does not check the occurence of integer overflowing.
*
* Note that UINT64_T is used here because the Borland C++ compiler (fr... |
f7cff146ddf6dc3f24df8db08fcaa4f839f1a294ad7139f2f32f7638c30e4aeb | C | 2,254 | 88 | /*
*
* Copyright (C) 2006-2007, Robert Oostenveld
*
* This implements C = A - B for uint64 data types
* and either A and B have the same size or one of them is scalar.
*
* This function does not check the occurence of integer overflowing.
*
* Note that UINT64_T is used here because the Borland C++ compiler (fr... |
01dea2f045bc3798cc351e15b9c06545e55e028338dbc454c71dc6b1b77e53d2 | C | 2,259 | 78 | /* docIdReport - generate report from docIdSub table. */
/* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "jksql.h"
#include "... |
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