sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
93e41c025101d3ab092a2f5b2c1bb978fcb74b68fcef9a781249e1749f98eb4c | C | 2,259 | 76 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
45095f7d43260416a9940f44e879a6f2afe242fefb5d6d4cd9c5a17ea696a855 | C | 2,261 | 85 | #include "../verrou.h"
#include <stdio.h>
#include <math.h>
#define NUM 20
float computeMaxFloat(float dat, float(*func)(float) ){
float maxValue=0.;
for(int i=0; i< NUM; i++){
float value= func(dat) - func(dat);
if(value<0){value=-value;}
if(value>maxValue){maxValue=value;}
}
return maxValue;... |
9f84907fb7d983047d8fd611eae4531a706b4d0c21c02ce93fad70dbbe9bca5b | C | 2,262 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
e194cbc7fad8e8aff217aa2a09670a214709cc0601aa3f97d2944a595a040a97 | C | 2,265 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
66e04ba8e2ba91a76b1b84967f801fa414d59f27b4697af89724a9a7f4c6a644 | C | 2,270 | 58 | #include "cs_mex.h"
/* cs_sparse: convert triplet form into compress-column form sparse matrix */
void mexFunction
(
int nargout,
mxArray *pargout [ ],
int nargin,
const mxArray *pargin [ ]
)
{
if (nargout > 1 || nargin != 3)
{
mexErrMsgTxt ("Usage: A = cs_sparse(i,j,x)") ;
}
if ... |
40a28400a468f2003a5569fc9f8b201692ce74ad9013a6bf009cc08105ceef32 | C | 2,272 | 93 | #include <stdio.h>
// Prototypes des fonctions BLAS et LAPACK
extern void dgemm_(const char *transa, const char *transb, const int *m,
const int *n, const int *k, const double *alpha,
const double *a, const int *lda, const double *b,
const int *ldb, const double... |
989f06eb2cac4ab4744e91af886cb9cd24889d24cdf0b32001566a032129e33c | C | 2,272 | 66 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
a3fb56fe50470f2b3aa6077836e7f829da3ba4cd2f23c24dce6368c7a593877f | C | 2,273 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
603dcbfd42e2b1ce2dbbacb16a9176b644342d7abc73f257e3cf3f1d7ea8f94f | C | 2,274 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
5311bfd348c755377874c8dac2c497440c9ac3ef10769e3f9de2101f54e91c88 | C | 2,281 | 67 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
1bd0d9f91719efa856e43bf4da945ef8856fca090d627bbc83365bdc6728e962 | C | 2,283 | 78 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2017-2018 OpenFOAM Foundation
\\... |
2d5e680bb55977d2618d4a969cfc6a0f13e377d8db9a95f581b273708ddff892 | C | 2,283 | 75 | /* edwFixTechRep1 - Parse edwFile.tags and if there's technical_replicate or paired_end add
* it to edwValidFile.. */
/* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#incl... |
57dcf819ab3390cf026fe1b7580d8194f465fe9af28a773307ea8eb6d18dfa65 | C | 2,284 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
ef347132bc707881b173d3fa4569507437eb899bb92cd33339a68c1ee6ddbfbf | C | 2,284 | 74 | /* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "hdb.h"
#include "jksql.h"
struct slName *chromNames = NULL;
char *dirName = NULL;
int chunkSize = 0;
void usage()
{
errAbort("nmerPa... |
10b59a931fc4c559ec9bac2f144a21fd6adda3674e169148d603c2aa82ba0e51 | C | 2,288 | 82 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
920e2f06d51714d5d943baa6c84e9e4baa5658b91c6b2d5d242c1d658ac1f606 | C | 2,288 | 61 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
b604f2d317eca3c3292ad3dd101e38249d9a8b834011044f6eead9c982dcd0d8 | C | 2,290 | 72 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
ced9441996492e197f77d2808380701dc098e71d0e19a2d139b179eb198f3de6 | C | 2,290 | 72 | /* htmlFromBeds - htmlFromBeds - This program creates a web page with a series of hyperlinks to the beds in the bed track. This is useful when a bed track is sparse and you want to just zoom to items instead of scrolling around.\n. */
/* Copyright (C) 2011 The Regents of the University of California
* See kent/LICEN... |
eb40b1c14faaab44808ddc8c8542d1f323f69208960719112689d46a86465f4e | C | 2,291 | 60 | /*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include "unistd.h"
/*****************************************************************************/
#include "tpcextensions.h"
#inclu... |
fc9f5caffd1a73b0e0051d41b6ab5205ca95390dac9cc3f701dcfc2162e1973c | C | 2,292 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
3115e9196bf12fb121d3d2838d7ba79db40416982dbb9f4e50cb3e97db265b09 | C | 2,293 | 92 | /*
function [assignment, cost] = assignmentsuboptimal2(distMatrix)
*/
#include <mex.h>
#include <matrix.h>
#define CHECK_FOR_INF
#define ONE_INDEXING
void assignmentsuboptimal2(double *assignment, double *cost, double *distMatrix, int nOfRows, int nOfColumns);
void mexFunction( int nlhs, mxArray *plhs[]... |
d195c3975d7b1e3dd91eb94c0adb1e18f0bd89ca4a4545ea73acf29f0f0edbec | C | 2,296 | 79 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
7c36dced752b6d6aa4264ba14ad9008756c6e9c8c9d4d39d448a818778437922 | C | 2,297 | 73 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2017-2018 OpenFOAM Foundation
\\... |
1a8815e8e6ec0b277bc8d733a8e83444ad94b5d5e8b55ff9119e1a6eaf672dfb | C | 2,298 | 99 | /* fullalte - Extracts full 3' end of intron based on a fragment.
* Used to fill out alt-splicing intron before skipped exon data
* set, which originally only had last 50 bp of intron. */
#include "common.h"
#include "dnautil.h"
#include "dnaseq.h"
#include "fa.h"
struct faSeq
{
struct faSeq *next;
struc... |
858a7509074d18bab5c3bdc7b2e8ac9d857e7495426c5c5b02fc170e0a65746b | C | 2,299 | 78 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2012-2018 OpenFOAM Foundation
\\... |
72c96cd8d43e81379e1e40a0313dd8bf118e4f7b292818b019385deb663ddb7c | C | 2,301 | 72 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
678330b3a89f4f3b6bf778c408bdc9ac5285800d1652a1b34025592ba55bb7d9 | C | 2,305 | 109 | /* This program retrieves one (or actually a few) records from a GenBank
* file. */
#include "common.h"
#include "linefile.h"
void usage()
/* Explain usage and exit. */
{
errAbort(
"gbOneAcc - retrieve one or a few records from a GenBank flat file.\n"
"usage:\n"
" gbOneAcc gbFile acc(s)\n"
"The output will be prin... |
3e8a4cbf9459152b081213cbe4f15eac6a85fad7b7fdbc1a4b347818e2b5022f | C | 2,308 | 94 | /* CrossCorr
* Cross-correlation function
* MEX file
*
* martin vinck 2010, adapted from Francesco Battaglia's crosscorr script
*
* input: t1, t2: two time series to cross correlate in seconds
* Important: the timeseries should be sorted!
* binsize: the binsize for the cross corr histogram in seconds
... |
15db05e5c66a3659b2302af0bbcdbb3e1cef9c9cdd060926e3c9ca600d86e8cb | C | 2,309 | 72 | /* edwWebCreateUser - Allows one user to create another - vampire mode - over web.. */
/* Copyright (C) 2014 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"... |
c4ec0a33fd65ef12cb7b106f361904242fee1c922a151a67a6bfd72bd30f6777 | C | 2,309 | 77 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
0494d4ab3992240834806e64164c6d3469a58d050820c57ce6fdd6552cee1901 | C | 2,310 | 78 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2016-2018 OpenFOAM Foundation
\\... |
7c76b2c48a63e3e199de065be2b49aaedd0814d4564ebd78c322e4c14c024f54 | C | 2,310 | 95 | /* NewAlts- make a list of new alt-spliced genes.
*/
#include "common.h"
#include "hash.h"
#include "ascUtils.h"
struct altSpec *weedAlts(struct hash *weedHash, struct altSpec *altList)
{
struct altSpec *newList = NULL;
struct altSpec *alt, *next;
alt = altList;
while (alt != NULL)
{
next = alt->next;
... |
4529799b0dc3ba1bb944dafa0c57a01b7ababdd006a85894682eda08f9424cf9 | C | 2,312 | 70 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
3b5c5dc0f55775911d4a876442ae5b0da6975be66f81a40b289ac384e50d1f41 | C | 2,314 | 76 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
bc90ef2d3098c955149772295933675110f7f7374f843756ec2b59d2bb5aacb6 | C | 2,314 | 114 | /* test of the JSON output code */
#include <stdio.h>
#include "output/doc.h"
#include "output/doc2.h"
#include "common.h"
#include "errAbort.h"
#include "linefile.h"
#include "obscure.h"
#include "dystring.h"
#include "cheapcgi.h"
#include "asParse.h"
#define NUMPOINTS 3
#define NUMFACES 2
int main()
{
int i, ... |
df3d1a2a9bf6e275cd0f1a3c795bac5d3922b84357b90fa14cfe60f15a74c4f8 | C | 2,314 | 69 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
bca1508978c6436b643158c0ac558d32502adde461f9c1285eb3cfe3a5c7634a | C | 2,317 | 63 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
d1120505f1cda065b640ee75ec48c8ee10d3481d8784d4b007d6453aa63372ed | C | 2,317 | 77 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2013-2018 OpenFOAM Foundation
\\... |
56448378a4ee844e31c1e5ab87a44885ad3c4efaee9204038998422b65ee64e2 | C | 2,318 | 82 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
a813164e2f3a93290589f36d5f662b58df8ce13c60cfe867bd8a346830b97343 | C | 2,318 | 79 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2019 OpenFOAM Foundation
\\... |
d8e46d4b3b23154f99a5efbe555bc68f36ec2f969bcdaca91782bea615a710ca | C | 2,318 | 77 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
f46c73ea187442801565888ea5a52d02c6e7e809b1a40fc41f5d5c55a16c9c07 | C | 2,325 | 73 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2017-2018 OpenFOAM Foundation
\\... |
83336999636e1f16bf5bcbd345739e392b5062b196a026c5bb668039a46e35be | C | 2,328 | 76 | /* cdwFixInvisibleIndexFiles - Bring in invisible index files.. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "portable.h"
#include "jksql.h"
#include "cdw.h"
#include "cdwLib.h"
void usage()
/* Explain usage and exit. */
{
errAbort(
"cdwFixInvisibleIndexFiles - Bring i... |
e935bb07c70850a5f0c44cab3dc2cd6ec176edc002a0b8d005a08ff65bfa174e | C | 2,330 | 78 | /* cartReset - Reset cart. */
/* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "cheapcgi.h"
#include "htmshell.h"
#include "hui.h"
#include "cart.h... |
ff2b51802395f5dd1cb2ec4ce2f7a1c6db4a04f78dfeaa9ac9ca0171760a1c2a | C | 2,331 | 59 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
467787959acc3cfa2f0e69db3fa888869f6951c9ffb849d6ce42454b23636c13 | C | 2,332 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
1f4030034e36982df270fbe55bba69aa9b4145ade916e531730f5f84905c208f | C | 2,333 | 100 | /* facetFieldTest - test facetFields. */
/* Copyright (C) 2014 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "dystring.h"
#include "cheapcgi.h"
... |
d5a5f4507e72ac614ba687abad6df577174e6cf67fdda39462609d3bb570365f | C | 2,338 | 82 | /* Regression test: --inst-func on a function declaring a variable-length
* array used to segfault.
*
* Clang brackets a VLA with a llvm.stacksave / llvm.stackrestore pair. The
* function instrumentation pass moved the llvm.stackrestore call into an
* out-of-line hook function, where it rewound the stack pointer p... |
72f394bd99adfee55390a265db0e888defc0f23c67424f0d9ee93315f92c7e0c | C | 2,342 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
8ae6db5179dbd2c02cfd01e0215d6b066e6502b2fb6829dee9547d9c744153b9 | C | 2,342 | 68 | /*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include "tpcextensions.h"
#include "test_tpcnifti.h"
/*************************************************************************... |
6f020898ff7b63dde424bd91ef8dac3d36c49992908de01b3be2e5232d7ceb8d | C | 2,344 | 81 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
1a0158ce4dea66869a20154fda20097065987efe562ec8a014d74880d782a66d | C | 2,347 | 67 | #include "cs_mex.h"
/* cs_add: sparse matrix addition */
#ifndef NCOMPLEX
static cs_complex_t get_complex (const mxArray *a)
{
cs_complex_t s = mxGetScalar (a) ;
if (mxIsComplex (a))
{
double *z = mxGetPi (a) ;
s += I * z [0] ;
}
return (s) ;
}
#endif
void mexFunction
(
int nar... |
4e7552f151f5353f98c1bcb22e3ac834ed192cff358c0e8ca952b9031b4a3ffb | C | 2,347 | 80 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
ed04f3cfee413bfdfd4bd7acc25a6804b14302509918d9f5b810e2fd25bdac91 | C | 2,347 | 79 | /* Module for SwitchGear Genomics tracks. */
/* Copyright (C) 2010 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "hgTracks.h"
#include "switchGear.h"
struct slList *switchDbTssLoadConduit(char **row)
{
re... |
7dbf26246ba9e04975d4bacc1211e3bd2482ef4bfddd261a896795c52253af23 | C | 2,350 | 89 | /* interflop_call(INTERFLOP_ROUND_DW_ID, ...) must round the double-word
* number x + e with PRISM's mode, virtual precision and random state.
*
* Usage:
* test tie - x = 1 + 2^-10 is a tie at t = 10; prints the result for
* e = -2^-60 and e = +2^-60 (run with --mode rn)
* test sr64 N ... |
00fecac6feba03fb9e92acf2bbd7515294534d1a2521d1f972ee88834e4b06f5 | C | 2,354 | 62 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
b83c48aca6893a1af68747270b66bf7af25d1b451cd5f51ac7a06851706eeb94 | C | 2,355 | 79 | /* Copyright (C) 2015 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
/* hgGtexApi - a web API to selected GTEx resources
*
* usage: http://hgwdev-kate.gi.ucsc.edu/cgi-bin/hgGtexApi?gene=ENSG00000223972.4
*
* returns JSON in the for... |
e49e5135b4f3b7c14cf6e64834cb486706c7420b684dc89600f60bfe9a76f28d | C | 2,357 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
76f68211b8c57e54865b4993138fa4b1d54053369202c94638445a6216135162 | C | 2,361 | 79 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
14cd583c90d583c264606a99853e248c5b9d3ec65de1f5ae1cc6329f6ef12900 | C | 2,362 | 78 | /* encode2Md5UpdateManifest - Update md5sum, size, validation key in an
* encode2 manifest.tab file.. */
/* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "linefile.h"
#include "hash.h"... |
4aa189fd048b8f5a2da35d217ad7801a26a0eaa1ba35f4785812085240c9a74f | C | 2,363 | 82 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
8a7f953b30dca371ea1b836df0cb11ce7470f57406c20525e4188f79cc9041cb | C | 2,363 | 101 | /* Convert calls to older style library */
#include "common.h"
#include "../compiler/pfPreamble.h"
extern void pf_print(_pf_Stack *stack);
void print(_pf_Stack stack)
/* Print out single variable where type is determined at run time.
* Add newline. */
{
pf_print(&stack);
}
struct _pf_object *vaTupleToClass(struct... |
8de1bf4725fe661808599e35f134e0d1c259f9fbb222002b5442525d6a85ad2b | C | 2,369 | 102 | /* wiggle - stuff to process wiggle tracks.
* Much of this is lifted from hgText/hgWigText.c */
/* Copyright (C) 2011 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "hash.h"
#include "linefile.h"
#include... |
359b76f990847a4a3e7733525cecc607055b19553db0ad1440ed7615404ffb8d | C | 2,371 | 77 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
c2f977c2e032257c8ec7f04e20df35b44ca3affcbf400903c7ee7e1eb09daf3e | C | 2,371 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
abb32e926a342a368ec18c6c87a0942bf9f317e83239e4050d8f259380b12245 | C | 2,376 | 118 | /* Adapted from http://www.astro.umd.edu/~dcr/Courses/ASTR615/ps2sol/node1.html
** kahan.c
** =======
** Computes sums using the Kahan correction algorithm.
*/
#include <stdio.h>
#include <stdlib.h> /* for rand() */
#include <unistd.h> /* for getpid() */
#include <time.h> /* for time() */
#include <math.h>
#include <a... |
76e018604853b684d8d6842b5f42b630c478f848ae1b0771e5863404fb816a45 | C | 2,382 | 83 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
f5be51a43663b3102ba356172852090ce9083698362041f7252d15d4b5f3097b | C | 2,382 | 65 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
144075690a452fa20e68f8129286d6a7425c61932671df33349d429e85013054 | C | 2,384 | 74 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
049a435d5ff5337e0bdb1c5556ff36b916db7a60eb3d23568c2ce942467b2428 | C | 2,386 | 63 | /** @file backup.c
* @brief Functions for file backup.
*/
/*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include "tpcextensions.h"
/*************************************... |
5546c24a29318e954861f2536c76289c978845be3775e4bcb60309a75dd699a7 | C | 2,386 | 74 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
ee781cf1f79a682a5952bac016335d4fbedf900c9ff54a6b2f74c26adb6c594d | C | 2,387 | 76 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
b31d59186cfa7e966a940798050f7938b854dbcfd10bdc19bb7205c4fb8c341b | C | 2,389 | 88 | /* motifLogo - Make a sequence logo out of a motif.. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "portable.h"
#include "dystring.h"
#include "dnaMotif.h"
#include "dnaMotifSql.h"
char *tempDir = ".";
char *gsExe = "gs";
void usage()
/* Explain usage and exit. */
{
er... |
c97b6d36eef56498ef5d7bf090011039924d66904816467c1f2c0c083655609d | C | 2,389 | 79 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2012-2018 OpenFOAM Foundation
\\... |
4d4b74a5a5a957ee11780c764e8a109043105b0be844e6a7f331590f16f58377 | C | 2,395 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
95f1c2913f8ead80b444f2b4095a167eac9f1202f4112544180498354c849d76 | C | 2,395 | 60 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
196a53be9c22f77e4c0cb6b3fbc08d9a933a02f492860babf68d2ca77ce551fa | C | 2,399 | 89 | /* bedThickToCds - Create CDS predictions in RNA coordinates from thickStart/thickEnd
* of BED file. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "bed.h"
void usage()
/* Explain usage and exit. */
{
errAbort(
"bedThickToCds - Create CDS predictions in RNA coordinate... |
3d2a6f15c0d6869cce79f8920f6407658d5d59d290c30be3f26552f858647ee8 | C | 2,399 | 76 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2017-2018 OpenFOAM Foundation
\\... |
cd2aca557fb144db4c552abdcd6eae295d36ead0f39e7c60c58388d07df981ed | C | 2,399 | 79 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
be4168c51abbe6b7facce87f619e09605bba66cab88a7c54eb822d01384a333c | C | 2,400 | 75 | /* Copyright (C) 2013 The Regents of the University of California
* See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
#include "common.h"
#include "cheapcgi.h"
#include "hgTrackUi.h"
#include "trackDb.h"
#include "cgapSage/cgapSage.h"
#include "cgapSage/cgapSageLib.h"
static struct s... |
28cf1f6c44285e8647122700a5719e6b7b5fd1b31693b52f635785703e467063 | C | 2,403 | 93 | /* hcaAddSrrFiles - Add srr files to a HCA tagStorm as a files[] array in assay.. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "tagStorm.h"
#include "csv.h"
/* Global vars */
int gSrrCount = 0, gFileCount = 0; // Keep track of number srr tags in and files out */
void u... |
025415f5141f768b1439d78fd9ad93852638471624dc0ad75a7c39da883938c1 | C | 2,404 | 88 | /* Written in 2018 by David Blackman and Sebastiano Vigna ([email protected])
To the extent possible under law, the author has dedicated all copyright
and related and neighboring rights to this software to the public domain
worldwide. This software is distributed without any warranty.
See <http://creativecommons.org/pub... |
6846058ef1c84745e5d760e26df34858305801f0c5be12236967669c7a90ed88 | C | 2,406 | 85 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
8e0da3c71cc534b296f78a8cd9671cbe9a708ee673c65c5845dcaa51823ebbc4 | C | 2,406 | 70 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
e92c3c695e418f886f6616a59102a1a38b0e5af1ca1506033603b581cd8c92be | C | 2,407 | 88 | /* Written in 2019 by David Blackman and Sebastiano Vigna ([email protected])
To the extent possible under law, the author has dedicated all copyright
and related and neighboring rights to this software to the public domain
worldwide. This software is distributed without any warranty.
See <http://creativecommons.org/pub... |
161ff4afa1306300a71b4a22c5ebf4e5bf3d771b7adaf6918d08b58bf10a8c18 | C | 2,409 | 78 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
29df6bb7bce78f4646283b0f6867cfe5b2a949423bce39101b3e199c2f15f8e7 | C | 2,410 | 86 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
41d2157a5ebd9c7f13d7002576f25007082bfba0ff29c01130c07504cd7ddb09 | C | 2,411 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
30d381b19d325c6c2b14d32708387cbf7909e9e8f879643cdcaeecffaa4c3a37 | C | 2,412 | 76 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
74e3219dbe024b6dc78eb6b46b38fdbb09f42230c0050dafff4f620758b98ddc | C | 2,412 | 79 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
22e27b8514d10f32577a03ad0f3c6e1e124eeda2d07e8832fa0670377f1268e6 | C | 2,413 | 112 | /* Check symmetry */
#include "common.h"
#include "linefile.h"
#include "psLayHit.h"
void usage()
/* Print usage and exit. */
{
errAbort("chkSym - checks alignment for symmetry\n"
"usage:\n"
" chkSym file.psl");
}
int perfectCount = 0;
int okCount = 0;
int badCount = 0;
boolean areClose(int a, int b... |
3804fde7129e0c4f9a3e1141eb066c1b9e8de15a47c7ae292d6948d1c4f6cbcd | C | 2,413 | 75 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
cdd2d91df3a5414187eec089f771ba48f3e86c19b533c489a1f62179748c0b3a | C | 2,414 | 78 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
0859cad611b3809b09397719957f2de4e17c1b3d13884838fcdd2277ec5fb50f | C | 2,415 | 82 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2014-2018 OpenFOAM Foundation
\\... |
b2906abb895709a2bfdab818e0b5611db17bc1aca5cf70fff61287165389d93e | C | 2,415 | 80 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2011-2018 OpenFOAM Foundation
\\... |
98d631c135f625c877c09cd9ef75fee443be3aa545a0a030372b33a13e379df2 | C | 2,417 | 66 | /*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include "tpcextensions.h"
#include "test_tpctac.h"
/***************************************************************************... |
adbc381074493318ec585fa8f7764ef770ed4315db80f170cd6d1e5c27a0a639 | C | 2,421 | 79 | /* PANDAseq -- Assemble paired FASTQ Illumina reads and strip the region between amplification primers.
Copyright (C) 2011-2012 Andre Masella
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Fou... |
176ebb4bc1a427992348e9dc6256d5a20604ca74db206af2d1c2922f2b81db0a | C | 2,425 | 66 | /** @file tacname.c
* @brief Working with TAC names in TAC structure.
*/
/*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include "tpcift.h"
/************************************... |
3f22ccdd65f3ff9238ada8b38a8fa3e78bf4d3c0dbadc5b7ac58dd555256d985 | C | 2,426 | 70 | /*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Copyright (C) 2015-2018 OpenFOAM Foundation
\\... |
36247f21c35c06878f42b48ea63a06c01eda5e8afd17678f6324aa8671fc7d5a | C | 2,428 | 66 | /*****************************************************************************/
#include "tpcclibConfig.h"
/*****************************************************************************/
#include "tpcextensions.h"
#include "test_tpctac.h"
/***************************************************************************... |
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